| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009C18 | Sequence | 557 | 004657 (4) | ref|XP_009766121.1| | 6e-78 | PREDICTED: uncharacterized protein LOC104217540 isoform X2 [Nicotiana sylvestri | 753 | 012454 (4) | emb|CDP13243.1| | 5e-68 | unnamed protein product [Coffea canephora] |
| JMFF041F10 | Sequence | 648 | 004657 (4) | ref|XP_009766121.1| | 2e-97 | PREDICTED: uncharacterized protein LOC104217540 isoform X2 [Nicotiana sylvestri | 603 | 012454 (4) | emb|CDP13243.1| | 4e-54 | unnamed protein product [Coffea canephora] |
| JMFF046K20 | Sequence | 558 | 004657 (4) | ref|XP_002282325.1| | 234 | PREDICTED: uncharacterized protein LOC100245809 [Vitis vinifera] | 501 | 012454 (4) | emb|CDP13243.1| | 5e-39 | unnamed protein product [Coffea canephora] |
| JMSF035H02 | Sequence | 675 | 004657 (4) | ref|XP_009766120.1| | 3e-106 | PREDICTED: uncharacterized protein LOC104217540 isoform X1 [Nicotiana sylvestri | |||||
This contig is upended
. : . : . : . : . : . :
JMSF035H02+ CCCCAGTCAGCATACTGTTGATAGAG
____________________________________________________________
consensus CCCCAGTCAGCATACTGTTGATAGAG
. : . : . : . : . : . :
JMSF035H02+ CGACNTAAGAAATGCCCTTCCGGCTCCAGTTTTGGTATTCACGCTCATGAAACCATTCTT
JMFF041F10+ TGCCCTTCCGGCTCCAGTTTTGGTATTCACGCTCATGAAACCATTCTT
____________________________________________________________
consensus CGACNTAAGAAATGCCCTTCCGGCTCCAGTTTTGGTATTCACGCTCATGAAACCATTCTT
. : . : . : . : . : . :
JMFF009C18+ ACATCACTTGCATACCACTGCCTGCCGCC
JMSF035H02+ CATCCACGCACAGGCCCTCTCCTTAATTCCTACATCACTTGCATACCACTGCCTGCCGCC
JMFF041F10+ CATCCACGCACAGGCCCTCTCCTTAATTCCTACATCACTTGCATACCACTGCCTGCCGCC
JMFF046K20+ CATACCACTGCCTGCGCTT
____________________________________________________________
consensus CATCCACGCACAGGCCCTCTCCTTAATTCCTACATCACTTGCATACCACTGCCTGCCGCC
. : . : . : . : . : . :
JMFF009C18+ TTCTTCATAAGCTTTGCCCGTTTTAACATCCAGGATTGGGGTATGATCATTGACTGCCTG
JMSF035H02+ TTCTTCATAAGCTTTGCCCGTTTTAACATCCAGGATTGGGGTATGACCATTGACTGCCTG
JMFF041F10+ TTCTTCATAAGCTTTGCCCGTTTTAACATCCAGGATTGGGGTATGACCATTGACTGCCTG
JMFF046K20+ TTCTTCATAAGCTTTGCCCG-TTTAACATCCAGGATTGGGGTATGACCATTGACTGCCTG
____________________________________________________________
consensus TTCTTCATAAGCTTTGCCCGTTTTAACATCCAGGATTGGGGTATGACCATTGACTGCCTG
. : . : . : . : . : . :
JMFF009C18+ CGTACTAACACCTCTCATGAGGTGAATCCCGAATTTCAAACCCATGCTATGAACTTTAGC
JMSF035H02+ CGTACTAACACCTCTCATGAGGTGAATCCCGAATTTCAAACCCATGCTATGAACTTTAGC
JMFF041F10+ CGTACTAACACCTCTCATGAGGTGAATCCCGAATTTCAAACCCATGCTATGAACTTTAGC
JMFF046K20+ CGTACTAACACCTCTCATGAGGTGAATCCCGAATTTCAAACCCATGCTATGAACTTTAGC
____________________________________________________________
consensus CGTACTAACACCTCTCATGAGGTGAATCCCGAATTTCAAACCCATGCTATGAACTTTAGC
. : . : . : . : . : . :
JMFF009C18+ AGCAACGTCAGTGAATCCTCTACCACCCGCAGACGAAGGCCATCTACCCGGGTCTGGTTG
JMSF035H02+ AGCAACGTCAGTGAATCCTCTACCACCCGCAGACGAAGGCCATCTACCCGGGTCTGGTTG
JMFF041F10+ AGCAACGTCAGTGAATCCTCTACCACCCGCAGACGAAGGCCATCTACCCGGGTCTGGCTG
JMFF046K20+ AGCAACGTCAGTGAATCCTCTACCACCCGCAGACGAAGGCCATCTACCCGGGTCTGGCTG
____________________________________________________________
consensus AGCAACGTCAGTGAATCCTCTACCACCCGCAGACGAAGGCCATCTACCCGGGTCTGGTTG
. : . : . : . : . : . :
JMFF009C18+ CATTCTTCCCCATTCATCGATTACATCAAATCCAAGAGAATCAGTGTAGGCACCCTCTAC
JMSF035H02+ CATTCTTCCCCATTCATCGATTACATCAAATCCAAGAGAATCAGTGTAGGCACCCTCTAC
JMFF041F10+ CATTCTTCCCCATTCATCGATTACATCAAATCCAAGAGAATCAGTGTAGGCACCCTCTAC
JMFF046K20+ CATTCTTCCCCATTCATCGATTACATCAAATCCAAGAGAATCAGTGTAGGCACCCTCTAC
____________________________________________________________
consensus CATTCTTCCCCATTCATCGATTACATCAAATCCAAGAGAATCAGTGTAGGCACCCTCTAC
. : . : . : . : . : . :
JMFF009C18+ TTTTTTTCTATACCACAGAAAATCCACCACAACATACTCATAACCTTTAGATTTTAACCG
JMSF035H02+ TTTTTTTCTATACCACAGAAAATCCACCACAACATACTCATAACCTTTAGATTTTAACCG
JMFF041F10+ TTTTTTTCTATACCACAGAAAATCCACCACAACATACTCATAACCTTTAGATTTTAACCG
JMFF046K20+ TTTTTTTCTATACCACAGAAAATCCACCACAACATACTCATAACCTTTAGATTTTAACCG
____________________________________________________________
consensus TTTTTTTCTATACCACAGAAAATCCACCACAACATACTCATAACCTTTAGATTTTAACCG
. : . : . : . : . : . :
JMFF009C18+ CTGAGCAACAAGTTCTACATTTTGAAGGAACTGTTCCTCGGTGATGACCCAAGAAAACGA
JMSF035H02+ CTGAGCAACAAGTTCTACATTTTGAAGGAACTGTTCCTCGGTGATGACCCAAGAAAACGA
JMFF041F10+ CTGAGCAACAAGTTCTACATTTTGAAGGAACTGTTCCTCGGTGATGACCCAAGAAAACGA
JMFF046K20+ CTGAGCAACAAGTTCTACATTTTGAAGGAACTGTTCCTCGGTGATGACCCAAGAAAACGA
____________________________________________________________
consensus CTGAGCAACAAGTTCTACATTTTGAAGGAACTGTTCCTCGGTGATGACCCAAGAAAACGA
. : . : . : . : . : . :
JMFF009C18+ GTCATAGGAATTCCAACCCCTTGGTGGTAAGTTAGCATGCCCTGTTTCATCTTTAGGCTG
JMSF035H02+ GTCATAGGAATTCCAACCCCTTGGTGGTAAGTTAGCATGCCCTGTTTCATCTTTAGGCTG
JMFF041F10+ GTCATAGGAATTCCAACCCCTTGGTGGTAAGTTAGCATGCCCTGTTTCATCTTTAGGCTG
JMFF046K20+ GTCATAGGAATTCCAACCCCTTGGTGGTAAGTTAGCATGCCCTGTTTCATCTTTAGGCTG
____________________________________________________________
consensus GTCATAGGAATTCCAACCCCTTGGTGGTAAGTTAGCATGCCCTGTTTCATCTTTAGGCTG
. : . : . : . : . : . :
JMFF009C18+ AGCTTCTGAATTTATCCCATGAAGCCCAGAAAGACTGAAGAAGAAGACAAAGAGGCAGCT
JMSF035H02+ AGCTTCTGAATTTATCCCATGAAGCCCAGAAAGACTGAAGAAGAAGACAAAGAGGCAGCT
JMFF041F10+ AGCTTCTGAATTTATCCCATGAAGCCCAGAAAGACTGAAGAAGAAGACAAAGAGGCAGCT
JMFF046K20+ AGCTTCTGAATTTATCCCATGAAGCCCAGAAAGACTGAAGAAGAAGACAAAGAGGCAGCT
____________________________________________________________
consensus AGCTTCTGAATTTATCCCATGAAGCCCAGAAAGACTGAAGAAGAAGACAAAGAGGCAGCT
. : . : . : . : . : . :
JMFF009C18+ GATCGAGCTCAAAACAACAGCTTTCATAGTCATTCAAGAGAATGAAGC
JMSF035H02+ GATCGAGCTCAAAACAACAGCTTTCATAGTCATTCAAGAGAATGAAGC
JMFF041F10+ GATCGAGCTCAAAACAACAGCTTTCATAGTCATTCAAGAGAATGAAGCCAGAACCGCCTG
JMFF046K20+ GATCGAGCTCAAAACAACAGCTTTCATAGTCATTCAAGAGAATGAAGCCAGAACCGCCTG
____________________________________________________________
consensus GATCGAGCTCAAAACAACAGCTTTCATAGTCATTCAAGAGAATGAAGCCAGAACCGCCTG