Contig 004634:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043G17Sequence635004634 (2)ref|XP_006338902.1|1e-102PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006610005682 (3)ref|XP_004230447.1|5e-59PREDICTED: coatomer subunit delta-like [Solanum lycopersicum] ref|XP_010314473.1
JMSF022O10Sequence644004634 (2)ref|XP_006338902.1|8e-111PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006723005682 (3)ref|XP_004230447.1|1e-49PREDICTED: coatomer subunit delta-like [Solanum lycopersicum] ref|XP_010314473.1

Alignment

This contig is upended


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JMSF022O10+ TCTCAATCT
                      ____________________________________________________________
consensus TCTCAATCT
 
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JMSF022O10+ TGCTTTTGTCAATCTCACTAGCTTTGCGCTTCATGACATCCTTAGTTTCATTAATCTTGC
JMFF043G17+ GCGCTTCATGACATCCTTAGTTTCATTAATCTTGC
                      ____________________________________________________________
consensus TGCTTTTGTCAATCTCACTAGCTTTGCGCTTCATGACATCCTTAGTTTCATTAATCTTGC
 
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JMSF022O10+ TCTGCAAGACCATCTTGTGCAATCTTTCTTCATGACTCTCCATTTCACAGTACTGTTTGA
JMFF043G17+ TCTGCAAGACCATCTTGTGCAATCTTTCTTCATGACTCTCCATTTCACAGTACTGTTTGA
                      ____________________________________________________________
consensus TCTGCAAGACCATCTTGTGCAATCTTTCTTCATGACTCTCCATTTCACAGTACTGTTTGA
 
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JMSF022O10+ CTTGTGCGCCCGTAACATTCTCCTTATGCCCCAGAGATATGACTTCATCAAATGCAAAAA
JMFF043G17+ CTTGTGCGCCCGTAACATTCTCCTTATGCCCCAGAGATATGACTTCATCAAATGCAAAAA
                      ____________________________________________________________
consensus CTTGTGCGCCCGTAACATTCTCCTTATGCCCCAGAGATATGACTTCATCAAATGCAAAAA
 
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JMSF022O10+ TGAGCTCAAATGCTGTTTTACATATGCCCTCCTCATCTAGGGAATAACAATACTCAGGCA
JMFF043G17+ TGAGCTCAAATGCTGTTTTACATATGCCCTCCTCATCTAGGGAATAACAATACTCAGGCA
                      ____________________________________________________________
consensus TGAGCTCAAATGCTGTTTTACATATGCCCTCCTCATCTAGGGAATAACAATACTCAGGCA
 
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JMSF022O10+ CGAGTTTTGAAAGCAGTCTAAGTGTCTCCAGATCTTCTAGAATGTTGCTCTGTTTGTTAG
JMFF043G17+ CGAGTTTTGAAAGCAGTCTAAGTGTCTCCAGATCTTCTAGAATGTTGCTCTGTTTGTTAG
                      ____________________________________________________________
consensus CGAGTTTTGAAAGCAGTCTAAGTGTCTCCAGATCTTCTAGAATGTTGCTCTGTTTGTTAG
 
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JMSF022O10+ TGACAAGCAGCAAGTACAGAGACTCTATTGGCTGATAAACATATCGCACATTTTCAGTCT
JMFF043G17+ TGACAAGCAGCAAGTACAGAGACTCTATTGGCTGATAAACATATCGCACATTTTCAGTCT
                      ____________________________________________________________
consensus TGACAAGCAGCAAGTACAGAGACTCTATTGGCTGATAAACATATCGCACATTTTCAGTCT
 
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JMSF022O10+ CAACATAAGTGTGCTGTTTTCCAGTTCCAACCAATTTTGGGAAAGCAGCAAGGTATCCCT
JMFF043G17+ CAACATAAGTGTGCTGTTTTCCAGTTCCAACCAATTTTGGGAAAGCAGCAAGGTATCCCT
                      ____________________________________________________________
consensus CAACATAAGTGTGCTGTTTTCCAGTTCCAACCAATTTTGGGAAAGCAGCAAGGTATCCCT
 
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JMSF022O10+ CAATTCTAATTCGAGACATGTCCACAAACTGCCTCGAAACAAGTGCTTTCCCAGATTTGG
JMFF043G17+ CAATTCTAATTCGAGACATGTCCACAAACTGCCTCGAAACAAGTGCTTTCCCAGATTTGG
                      ____________________________________________________________
consensus CAATTCTAATTCGAGACATGTCCACAAACTGCCTCGAAACAAGTGCTTTCCCAGATTTGG
 
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JMSF022O10+ TTACAATGGAAGCTGCTAGAACAACCATCTTGA
JMFF043G17+ TTACAATGGAAGCTGCTAGAACAACCATCTTGAACTCTCGATCCTTAGAAATGAGCAGTC
                      ____________________________________________________________
consensus TTACAATGGAAGCTGCTAGAACAACCATCTTGAACTCTCGATCCTTAGAAATGAGCAGTC
 
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JMFF043G17+ AATTATGCTGAATCAGAAACCGGACCTCAATGTAGAAACACTCGATTCGCGCCCCTTCTT
                      ____________________________________________________________
consensus AATTATGCTGAATCAGAAACCGGACCTCAATGTAGAAACACTCGATTCGCGCCCCTTCTT
 
. : . : . : . : . : . :
JMFF043G17+ TCGGTCTGGAGCAGTAAAAACTAAAAACGAGATCAGTGTGATTCAGTGAAGGAGCAAAAT
                      ____________________________________________________________
consensus TCGGTCTGGAGCAGTAAAAACTAAAAACGAGATCAGTGTGATTCAGTGAAGGAGCAAAAT