Contig 004630:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025E01Sequence515004630 (18)gb|AGU28444.1|1e-70ribosomal protein 1, partial [Sinapis alba]
JMFF042I15Sequence401004630 (18)ref|XP_010912010.1|5e-48PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis]401004630 (18)ref|XP_010912010.1|5e-48PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis]
JMFF048F13Sequence393004630 (18)gb|KJB16202.1|5e-42hypothetical protein B456_002G217200 [Gossypium raimondii]282004630 (18)ref|XP_006349325.1|3e-17PREDICTED: 60S ribosomal protein L3-2-like isoform X1 [Solanum tuberosum] ref|X
JMSF009K08Sequence342004630 (18)emb|CDY26351.1|8e-44BnaA03g60270D [Brassica napus]767004630 (18)ref|XP_009598742.1|1e-165PREDICTED: 60S ribosomal protein L3-2 [Nicotiana tomentosiformis]
JMSF016I22Sequence240004630 (18)emb|CDY26351.1|2e-31BnaA03g60270D [Brassica napus]757004630 (18)emb|CDO97512.1|2e-148unnamed protein product [Coffea canephora]
JMSF022M09Sequence673004630 (18)ref|XP_010030177.1|6e-106PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis] ref|XP_010030178.1| PRE759004630 (18)emb|CDO97512.1|4e-147unnamed protein product [Coffea canephora]
JMSF024O06Sequence671004630 (18)ref|XP_002524302.1|9e-14260S ribosomal protein L3, putative [Ricinus communis] gb|EEF38042.1| 60S ribosom
JMSF041L19Sequence744004630 (18)ref|XP_010030177.1|5e-125PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis] ref|XP_010030178.1| PRE748004630 (18)ref|XP_010912010.1|6e-120PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis]
JMSF042J13Sequence745004630 (18)ref|XP_010030177.1|2e-124PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis] ref|XP_010030178.1| PRE793004630 (18)emb|CDO97512.1|4e-145unnamed protein product [Coffea canephora]
JMSF043I06Sequence798004630 (18)ref|XP_010030177.1|1e-138PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis] ref|XP_010030178.1| PRE827004630 (18)emb|CDO97512.1|3e-157unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF016I22- GGCAGCAGT
JMSF041L19- AGCAGT
JMSF042J13- AGCAGT
JMSF022M09- AGCAGT
JMFF048F13- GCAGT
JMFF025E01- AGCAGT
JMSF009K08- AGCAGT
JMSF043I06- AGCAGT
                      ____________________________________________________________
consensus GGCAGCAGT
 
. : . : . : . : . : . :
JMSF016I22- TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
JMSF041L19- TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
JMSF042J13- TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
JMSF022M09- TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
JMFF048F13- TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
JMFF025E01- TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
JMSF009K08- TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
JMSF043I06- TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
                      ____________________________________________________________
consensus TGCCTTACCCAAAACTACTCATTTTCTTTCGCATCGTTGCTCTGAGATAGGAGGAAATGT
 
. : . : . : . : . : . :
JMSF016I22- CCCATCGCAAGTTTGAGCATCCAAGACATGGC-TCTCTGGGATTCCTTCCTAGGAAGAGA
JMSF041L19- CCCATCGCAAGTTTGAGCATCCAAGACATGGC-TCTCTGGGATTCCTTCCTAGGAAGAGA
JMSF042J13- CCCATCGCAAGTTTGAGCATCCAAGACATGGC-TCTCTGGGATTCCTTCCTAGGAAGAGA
JMSF022M09- CCCATCGCAAGTTTGAGCATCCAAGACATGGC-TCTCTGGGATTCCTTCCTAGGAAGAGA
JMFF048F13- CCCATCGCAAGTTTGAGCATCCAAGACATGGCATCTCTGGGATTCCTTCCTAGGAAGAGA
JMFF025E01- CCCATCGCAAGTTTGAGCATCCAAGACATGGC-TCTCTGGGATTCCTTCCTAGGAAGAGA
JMSF009K08- CCCATCGCAAGTTTGAGCATCCAAGACATGGC-TCTCTGGGATTCCTTCCTAGGAAGAGA
JMSF043I06- CCCATCGCAAGTTTGAGCATCCAAGACATGGC-TCTCTGGGATTCCTTCCTAGGAAGAGA
                      ____________________________________________________________
consensus CCCATCGCAAGTTTGAGCATCCAAGACATGGC-TCTCTGGGATTCCTTCCTAGGAAGAGA
 
. : . : . : . : . : . :
JMSF016I22- GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
JMSF041L19- GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
JMSF042J13- GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
JMSF022M09- GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
JMFF048F13- GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
JMFF025E01- GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
JMSF009K08- GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
JMSF043I06- GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
                      ____________________________________________________________
consensus GCATCTCGCCAAAGAGGAAAAGTGAAGGCATTCCCTAAAGATGATCAGACTAAGCCATGT
 
. : . : . : . : . : . :
JMSF016I22- AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAG
JMSF041L19- AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAGAGGTTGAG
JMSF042J13- AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAGAGGTTGAG
JMSF022M09- AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAGAGGTTGAG
JMFF048F13- AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAGAGGTTGAG
JMFF025E01- AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAGAGGTTGAG
JMSF009K08- AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAGAGGTTGAG
JMSF043I06- AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAGAGGTTGAG
                      ____________________________________________________________
consensus AGGTTGACTGCTTTTGTTGGATATAAAGCTGGTATGACTCATATTGTTCGAGAGGTTGAG
 
. : . : . : . : . : . :
JMSF041L19- AAGCCAGGATCAAAGCTGCACAAGAAGGAGACATGTGAAGCTGTGACAGTAATTGAAACC
JMSF042J13- AAGCCAGGATCAAAGCTGCACAAGAAGGAGACATGTGAAGCTGTGACAGTAATTGAAACC
JMSF022M09- AAGCCAGGATCAAAGCTGCACAAGAAGGAGACATGTGAAGCTGTGACAGTAATTGAAACC
JMFF048F13- AAGCCAGGATCAAAGCTGCACAAGAAGGAGACATGTGAAGCTGTGACAGTAATTGAAACC
JMFF025E01- AAGCCAGGATCAAAGCTGCACAAGAAGGAGACATGTGAAGCTGTGACAGTAATTGAAACC
JMSF009K08- AAGCCAGGATCAAAGCTGCACAAGAAGGAGACATGTGAAGCTGTGACAGTAATTGAAACC
JMSF043I06- AAGCCAGGATCAAAGCTGCACAAGAAGGAGACATGTGAAGCTGTGACAGTAATTGAAACC
                      ____________________________________________________________
consensus AAGCCAGGATCAAAGCTGCACAAGAAGGAGACATGTGAAGCTGTGACAGTAATTGAAACC
 
. : . : . : . : . : . :
JMSF041L19- CCTCCCATTG-TTGTTGTTGGAGTTGTTGGCTATGTCAAAACACCACGTGGGCTTCGCTG
JMSF042J13- CCTCCCATTG-TTGTTGTTGGAGTTGTTGGCTATGTCAAAACACCACGTGGGCTTCGCTG
JMSF022M09- CCTCCCATTG-TTGTTGTTGGAGTTGTTGGCTATGTCAAAACACCACGTGGGCTTCGCTG
JMFF048F13- CCTCCCATTGTTTGTTGTTGGAGTTGTTGGCTATGTCAAAACACCACGTGGGCTTCGCTG
JMFF025E01- CCTCCCATTG-TTGTTGTTGGAGTTGTTGGCTATGTCAAAACACCACGTGGGCTTCGCTG
JMSF009K08- CCTCCCATTG-TTGTTGTTGGAGTTGTTGGCTATGTC
JMSF043I06- CCTCCCATTG-TTGTTGTTGGAGTTGTTGGCTATGTCAAAACACCACGTGGGCTTCGCTG
                      ____________________________________________________________
consensus CCTCCCATTG-TTGTTGTTGGAGTTGTTGGCTATGTCAAAACACCACGTGGGCTTCGCTG
 
. : . : . : . : . : . :
JMSF041L19- TCTGAATACAGTCTGGGCACAACATCTGAGCGAGGAAGTGAGAAGGCGATTCTATAAAAA
JMSF042J13- TCTGAATACAGTCTGGGCACAACATCTGAGCGAGGAAGTGAGAAGGCGATTCTATAAAAA
JMSF022M09- TCTGAATACAGTCTGGGCACAACATCTGAGCGAGGAAGTGAGAAGGCGATTCTATAAAAA
JMFF048F13- TCTGAATACAGTCTGGGCACAACATCTG
JMFF025E01- TCTGAATACAGTCTGGGCACAACATCTGAGCGAGGAAGTGAGAAGGCGATTCTATAAAAA
JMSF043I06- TCTGAATACAGTCTGGGCACAACATCTGAGCGAGGAAGTGAGAAGGCGATTCTATAAAAA
                      ____________________________________________________________
consensus TCTGAATACAGTCTGGGCACAACATCTGAGCGAGGAAGTGAGAAGGCGATTCTATAAAAA
 
. : . : . : . : . : . :
JMSF041L19- CTGGTGCAAGTCCAAGAAGAAAGCTTTTTCCAAGTACTCAAAGAAGCTTGAAACTGAAGA
JMSF042J13- CTGGTGCAAGTCCAAGAAGAAAGCTTTTTCCAAGTACTCAAAGAAGCTTGAAACTGAAGA
JMSF022M09- CTGGTGCAAGTCCAAGAAGAAAGCTTTTTCCAAGTACTCAAAGAAGCTTGAAACTGAAGA
JMFF025E01- CTGGTGCAAGTCCAAGAAGAAAGCTTTTTCCAAGTACTCAAAGAAGCTTGAAACTGAAGA
JMSF043I06- CTGGTGCAAGTCCAAGAAGAAAGCTTTTTCCAAGTACTCAAAGAAGCTTGAAACTGAAGA
                      ____________________________________________________________
consensus CTGGTGCAAGTCCAAGAAGAAAGCTTTTTCCAAGTACTCAAAGAAGCTTGAAACTGAAGA
 
. : . : . : . : . : . :
JMSF041L19- AGGGAAAAAGGAAATTCAATCTGAGTTGGAGAAGATGAAGAAGTACTGCTGTATAA-TTA
JMSF042J13- AGGGAAAAAGGAAATTCAATCTGAGTTGGAGAAGATGAAGAAGTACTGCTGTATAA-TTA
JMSF022M09- AGGGAAAAAGGAAATTCAATCTGAGTTGGAGAAGATGAAGAAGTACTGCTGTATAA-TTA
JMFF025E01- AGGGAAAAAGGAAATTCAATCTGAGTTGGAG
JMSF043I06- AGGGAAAAAGGAAATTCAATCTGAGTTGGAGAAGATGAAGAAGTACTGCTGTATAA-TTA
rJMSF009K08+ TGAGTTGGAGAAGATGAAGAAGTACTGCTGTATAA-TTA
rJMSF043I06+ GAGAAGATGAAGAAGTACTGCTGTATAATTTA
                      ____________________________________________________________
consensus AGGGAAAAAGGAAATTCAATCTGAGTTGGAGAAGATGAAGAAGTACTGCTGTATAA-TTA
 
. : . : . : . : . : . :
JMSF041L19- GGGTCTTGGTCCACACTCAGATAAGAAAAATGAAAGGTCTTAAGCAGAAGAAGGCACACT
JMSF042J13- GGGTCTTGGTCCACACTCAGATAAGAAAAATGAAAGGTCTTAAGCAGAAGAAGGCACACT
JMSF022M09- GGGTCTTGGTCCACACTCAGATAAGAAAAATGAAAGGTCTTAAGCAGAAGAAGGCACACT
JMSF043I06- GGGTCTTGGTCCACACTCAGATAAGAAAAATGAAAGGTCTTAAGCAGAAGAAGGCACACT
rJMSF009K08+ GGGTCTTGGTCCACACTCAGATAAGAAAAATGAAAGGTCTTAAGCAGAAGAAGGCACACT
rJMSF043I06+ GGGTCTTGGTCCACACTCAGATAAGAAAAATGAAAGGTCTTAAGCAGAAGAAGGCACACT
rJMSF022M09+ TAAGCAGAAGAAGGCACACT
rJMSF024O06+ AAGGCACACT
rJMSF016I22+ CTTAAGCAGAAGAAGGCACACT
rJMSF042J13+ TCTTAAGCAGAAGAAGGCACACT
rJMSF041L19+ CACACN
                      ____________________________________________________________
consensus GGGTCTTGGTCCACACTCAGATAAGAAAAATGAAAGGTCTTAAGCAGAAGAAGGCACACT
 
. : . : . : . : . : . :
JMSF041L19- TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
JMSF042J13- TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
JMSF022M09- TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGNTGATTATGCATATGGGT
JMSF043I06- TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
rJMSF009K08+ TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
rJMSF043I06+ TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
rJMSF022M09+ TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
rJMSF024O06+ TGATGNAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTNGATTATGCATATGGGT
rJMSF016I22+ TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
rJMSF042J13+ TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
rJMSF041L19+ TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
                      ____________________________________________________________
consensus TGATGGAGATTCAAGTCAATGGTGGAACAGTAGCTCAGAAGGTTGATTATGCATATGGGT
 
. : . : . : . : . : . :
JMSF041L19- TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
JMSF042J13- TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
JMSF022M09- TCTTTGAAA
JMSF043I06- TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
rJMSF009K08+ TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
rJMSF043I06+ TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
rJMSF022M09+ TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
rJMSF024O06+ TCTNTGAAAAGCAGGTTCCTGTGGATNCTGTTTTCCAAAAAGATGAGATGATTGACATTA
rJMSF016I22+ TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
rJMSF042J13+ TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
rJMSF041L19+ TCTTTGAAAAGCAGGTTCCTGTGGATGCTG-TTTCCAAAAAGATGAGATGATTGACATTA
                      ____________________________________________________________
consensus TCTTTGAAAAGCAGGTTCCTGTGGATGCTGTTTTCCAAAAAGATGAGATGATTGACATTA
 
. : . : . : . : . : . :
JMSF041L19- TTGGGGTGACCAAAGGTAAG
JMSF042J13- TTGGGGTGACCAAAGGTAA
JMSF043I06- TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
rJMSF009K08+ TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
rJMSF043I06+ TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
rJMSF022M09+ TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
rJMSF024O06+ TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
rJMSF016I22+ TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
rJMSF042J13+ TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
rJMSF041L19+ TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
                      ____________________________________________________________
consensus TTGGGGTGACCAAAGGTAAGGGGTATGAGGGTGTGGTTACTCGTTGGGGTGTAACCCGTC
 
. : . : . : . : . : . :
JMSF043I06- TACCTCGTAAGA
rJMSF009K08+ TACCTCGTAAGACCCACCGTGGGCTCCGTAAGGTTGCTTGTATTGGGGCATGGCATCCGG
rJMSF043I06+ TACCTCGTAAGACCCACCGTGGGCTCCGTAAGGTTGCTTGTATTGGGGCATGGCATCCGG
rJMSF022M09+ TACCTCGTAAGACCCACCGTGGGCTCCGTAAGGTTGCTTGTATTGGGGCATGGCATCCGG
rJMSF024O06+ TACCTCGTAAGACCCACCGTGGGCTCCGTAAGGTTGCTTGTATTGGGGCATGGCATCCGG
rJMSF016I22+ TACCTCGTAAGACCCACCGTGGGCTCCGTAAGGTTGCTTGTATTGGGGCATGGCATCCGG
rJMSF042J13+ TACCTCGTAAGACCCACCGTGGGCTCCGTAAGGTTGCTTGTATTGGGGCATGGCATCCGG
rJMSF041L19+ TACCTCGTAAGACCCACCGTGGGCTCCGTAAGGTTGCTTGTATTGGGGCATGGCATCCGG
                      ____________________________________________________________
consensus TACCTCGTAAGACCCACCGTGGGCTCCGTAAGGTTGCTTGTATTGGGGCATGGCATCCGG
 
. : . : . : . : . : . :
rJMSF009K08+ CTAGGGTGTCATTCACAGTTGCCCGTGCTGGTCAAAATGGTTATCATCACCGCACAGAGT
rJMSF043I06+ CTAGGGTGTCATTCACAGTTGCCCGTGCTGGTCAAAATGGTTATCATCACCGCACAGAGT
rJMSF022M09+ CTAGGGTGTCATTCACAGTTGCCCGTGCTGGTCAAAATGGTTATCATCACCGCACAGAGT
rJMSF024O06+ NTAGGGTGTCATTCACAGTTGCCCGTGCTGGTCAAAATGGTTATCATCACCGCACAGAGT
rJMSF016I22+ CTAGGGTGTCATTCACAGTTGCCCGTGCTGGTCAAAATGGTTATCATCACCGCACAGAGT
rJMSF042J13+ CTAGGGTGTCATTCACAGTTGCCCGTGCTGGTCAAAATGGTTATCATCACCGCACAGAGT
rJMSF041L19+ CTAGGGTGTCATTCACAGTTGCCCGTGCTGGTCAAAATGGTTATCATCACCGCACAGAGT
                      ____________________________________________________________
consensus CTAGGGTGTCATTCACAGTTGCCCGTGCTGGTCAAAATGGTTATCATCACCGCACAGAGT
 
. : . : . : . : . : . :
rJMSF009K08+ TGAATAAGAAAGTGTATAAGCTGGGGAAGGCTGGTCAGGAGTCCCACCAGGCCATAACTG
rJMSF043I06+ TGAATAAGAAAGTGTATAAGCTGGGGAAGGCTGGTCAGGAGTCCCACCAGGCCATAACTG
rJMSF022M09+ TGAATAAGAAAGTGTATAAGCTGGGGAAGGCTGGTCAGGAGTCCCACCAGGCCATAACTG
rJMSF024O06+ TGAATAAGAAAGTGTATAAGCTGGGGAAGGNTGGTCAGGAGTCCCACCAGGCCATAACTG
rJMSF016I22+ TGAATAAGAAAGTGTATAAGCTGGGGAAGGCTGGTCAGGAGTCCCACCAGGCCATAACTG
rJMSF042J13+ TGAATAAGAAAGTGTATAAGCTGGGGAAGGCTGGTCAGGAGTCCCACCAGGCCATAACTG
rJMSF041L19+ TGAATAAGAAAGTGTATAAGCTGGGGAAGGCTGGTCAGGAGTCCCACCAGGCCATAACTG
                      ____________________________________________________________
consensus TGAATAAGAAAGTGTATAAGCTGGGGAAGGCTGGTCAGGAGTCCCACCAGGCCATAACTG
 
. : . : . : . : . : . :
rJMSF009K08+ AGTTTGACAGGACTGAGAAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
rJMSF043I06+ AGTTTGACAGGACTGAGAAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
rJMSF022M09+ AGTTTGACAGGACTGAGAAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
rJMSF024O06+ AGTTTGACAGGACTGAGAAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
rJMSF016I22+ AGTTTGACAGGACTGAGAAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
rJMSF042J13+ AGTTTGACAGGACTGAGAAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
rJMSF041L19+ AGTTTGACAGGACTGAGAAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
rJMFF042I15+ AAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
JMFF042I15- AAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
                      ____________________________________________________________
consensus AGTTTGACAGGACTGAGAAGGATATTACCCCAATTGGAGGGTTCCCTCACTATGGCATCG
 
. : . : . : . : . : . :
rJMSF009K08+ TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
rJMSF043I06+ TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
rJMSF022M09+ TGAAAGATGACTACATCATGATAAAGAGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
rJMSF024O06+ TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
rJMSF016I22+ TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
rJMSF042J13+ TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
rJMSF041L19+ TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
rJMFF042I15+ TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
JMFF042I15- TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
                      ____________________________________________________________
consensus TGAAAGATGACTACATCATGATAAAGGGTTGTTGTGTGGGTCCAAAGAAGCGCGTTGTCA
 
. : . : . : . : . : . :
rJMSF009K08+ CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
rJMSF043I06+ CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
rJMSF022M09+ CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
rJMSF024O06+ CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
rJMSF016I22+ CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
rJMSF042J13+ CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
rJMSF041L19+ CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
rJMFF042I15+ CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
rJMFF048F13+ TGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
JMFF042I15- CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
                      ____________________________________________________________
consensus CCTTGAGACAGTCCTTACTGAACCAAACCTCCAGGGTTGCATTGGAGGAGATCAAGCTCA
 
. : . : . : . : . : . :
rJMSF009K08+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
rJMSF043I06+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
rJMSF022M09+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
rJMSF024O06+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
rJMSF016I22+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
rJMSF042J13+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
rJMSF041L19+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
rJMFF042I15+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
rJMFF048F13+ AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
JMFF042I15- AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
                      ____________________________________________________________
consensus AGTTCATGGACACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACTACCCAGGAGAAAG
 
. : . : . : . : . : . :
rJMSF009K08+ CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTGTTCTTC
rJMSF043I06+ CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTGTTCTTCA
rJMSF022M09+ CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTGTTCTTCA
rJMSF024O06+ CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTGTTCTTCA
rJMSF016I22+ CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTGTTCTTCA
rJMSF042J13+ CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTGTTCTTCA
rJMSF041L19+ CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTGTTCTTCA
rJMFF042I15+ CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTTTTCTTCA
rJMFF048F13+ CCAAGTTCTATGGACGACTTAATGCTTAATCATTTCTGTTTCTGAAAAACTTGTTGTTTA
JMFF042I15- CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTTTTCTTCA
                      ____________________________________________________________
consensus CCAAGTTCTATGGACGACTTAAAGCTTAATCATTT-TGTTTCTGAAAAACTTGTTCTTCA
 
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rJMSF043I06+ TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGGCA-ACTGTTTTCC
rJMSF022M09+ TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGGCA-ACTGTTTTCC
rJMSF024O06+ TG
rJMSF016I22+ TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGGCA-ACTGTTTTCC
rJMSF042J13+ TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGGCA-ACTGTTTTCC
rJMSF041L19+ TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGGCA-ACTGTTTTCC
rJMFF042I15+ TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGGCA-ACTGTTTTCC
rJMFF048F13+ TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGCTACTCTGTTTTCC
JMFF042I15- TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGGCA-ACTGTTTTCC
                      ____________________________________________________________
consensus TGTATCTTCCTTTCGGATGCTTATGCAAATTTTGAGATGTTTTCTGGCA-ACTGTTTTCC
 
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rJMSF043I06+ TCATGGTTTAGTTGATT
rJMSF022M09+ TC
rJMSF016I22+ TCATGGTTTAGTTGATT
rJMSF042J13+ TCATGGTTTAGTTGATT
rJMSF041L19+ TCATGGTTTAGTTGATT
rJMFF042I15+ TCATGGTTTAGTTGATTTGGCAATGATGGTTAATAAATTGGTTGAAAACGATTCGATAGG
rJMFF048F13+ TCATGGTTTAGTTGATTTGGCAATGATGGTTCTTCTACTGGTTGAAAACGATTCGATAGG
JMFF042I15- TCATGGTTTAGTTGATTTGGCAATGATGGTTAATAAATTGGTTGAAAACGATTCGATAGG
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consensus TCATGGTTTAGTTGATTTGGCAATGATGGTTAATAAATTGGTTGAAAACGATTCGATAGG