Contig 004611:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038J17Sequence530004611 (4)ref|XP_010260115.1|3e-15PREDICTED: BTB/POZ domain-containing protein At5g60050 [Nelumbo nucifera]775008290 (5)ref|XP_010092990.1|4e-102hypothetical protein L484_007171 [Morus notabilis] gb|EXB53228.1| hypothetical p
JMSF021E11Sequence609004611 (4)ref|XP_006365150.1|6e-44PREDICTED: BTB/POZ domain-containing protein At5g60050-like [Solanum tuberosum]760008290 (5)ref|XP_002281741.1|5e-117PREDICTED: BTB/POZ domain-containing protein At5g60050 [Vitis vinifera] ref|XP_
JMSF023F15Sequence664004611 (4)ref|XP_006365150.1|5e-48PREDICTED: BTB/POZ domain-containing protein At5g60050-like [Solanum tuberosum]771008290 (5)ref|XP_002281741.1|8e-111PREDICTED: BTB/POZ domain-containing protein At5g60050 [Vitis vinifera] ref|XP_
JMSF028N21Sequence605004611 (4)ref|XP_006365150.1|1e-42PREDICTED: BTB/POZ domain-containing protein At5g60050-like [Solanum tuberosum]704008290 (5)ref|XP_010092990.1|3e-99hypothetical protein L484_007171 [Morus notabilis] gb|EXB53228.1| hypothetical p

Alignment

This contig is upended


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JMSF028N21+                                                            TTCAAGTCCTC
JMSF021E11+                                                            TTCAAGTCCTC
JMSF023F15+                           ACCTTAGAAACACCCTCACCAATCAATTTCTTCTTCAAGTCCTC
                      ____________________________________________________________
consensus                             ACCTTAGAAACACCCTCACCAATCAATTTCTTCTTCAAGTCCTC
 
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JMSF028N21+           ACAATACATAAGCACCACAGTCTTCACATACACCTCCACGTCATCGCAATCCAGGATCTC
JMSF021E11+           ACAATACATAAGCACCACAGTCTTCACATACACCTCCACGTCATCGCAATCCAGGATCTC
JMSF023F15+           ACAATACATAAGCACCACAGTCTTCACATACACCTCCACGTCATCGCAATCCAGGATCTC
                      ____________________________________________________________
consensus             ACAATACATAAGCACCACAGTCTTCACATACACCTCCACGTCATCGCAATCCAGGATCTC
 
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JMSF028N21+           CACCGAGTGCGACCCGCTCCGCCGGAGCTTCTCCGCGAAGAATCTGCTCCGGCCGGCCAG
JMSF021E11+           CACCGAGTGCGACCCGCTCCGCCGGAGCTTCTCCGCGAAGAATCTGCTCCGGCCGGCCAG
JMSF023F15+           CACCGAGTGCGACCCGCTCCGCCGGAGCTTCTCCGCGAAGAATCTGCTCCGGCCGGCCAG
                      ____________________________________________________________
consensus             CACCGAGTGCGACCCGCTCCGCCGGAGCTTCTCCGCGAAGAATCTGCTCCGGCCGGCCAG
 
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JMSF028N21+           CACCCTCCGATGAACGTCCATAGAAACCTTGGGCCACCCATCACGCGCCGCAATCGTCAG
JMSF021E11+           CACCCTCCGATGAACGTCCATAGAAACCTTGGGCCACCCATCACGCGCCGCAATCGTCAG
JMSF023F15+           CACCCTCCGATGAACGTCCATAGAAACCTTGGGCCACCCATCACGCGCCGCAATCGTCAG
JMFF038J17+                     TGAACGTCCATAGAAACCTTGGGCCACCCATCACGCGCCGCAATCGTCAG
                      ____________________________________________________________
consensus             CACCCTCCGATGAACGTCCATAGAAACCTTGGGCCACCCATCACGCGCCGCAATCGTCAG
 
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JMSF028N21+           CTTAACATCACCACCACTCCCAGAACCATCAATAAAATTACCATCGGCGCGGCTGGGGCT
JMSF021E11+           CTTAACATCACCACCACTCCCAGAACCATCAATAAAATTACCATCGGCGCGGCTGGGGCT
JMSF023F15+           CTTAACATCACCACCACTCCCAGAACCATCAATAAAATTACCATCGGCGCGGCTGGGGCT
JMFF038J17+           CTTAACATCACCACCACTCCCAGAACCATCAATAAAATTACCATCGGCGCGGCTGGGGCT
                      ____________________________________________________________
consensus             CTTAACATCACCACCACTCCCAGAACCATCAATAAAATTACCATCGGCGCGGCTGGGGCT
 
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JMSF028N21+           TTGGAAAGGTGCATGGGCCAAAACCCGGGAGATTCGCTCCTGGACTCGGTGGCGGGCCTC
JMSF021E11+           TTGGAAAGGTGCATGGGCCAAAACCCGGGAGATTCGCTCCTGGACTCGGTGGCGGGCCTC
JMSF023F15+           TTGGAAAGGTGCATGGGCCAAAACCCGGGAGATTCGCTCCTGGACTCGGTGGCGGGCCTC
JMFF038J17+           TTGGAAAGGTGCATGGGCCAAAACCCGGGAGATTCGCTCCTGGACTCGGTGGCGGGCCTC
                      ____________________________________________________________
consensus             TTGGAAAGGTGCATGGGCCAAAACCCGGGAGATTCGCTCCTGGACTCGGTGGCGGGCCTC
 
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JMSF028N21+           GGGGGATTGCCGGAAGTTGCGAGACTGCTCCTTGGACATCATATCGAAGAGGGTCTGGGT
JMSF021E11+           GGGGGATTGCCGGAAGTTGCGAGACTGCTCCTTGGACATCATATCGAAGAGGGTCTGGGT
JMSF023F15+           GGGTGATTGCCGGAAGTTGCGAGACTGCTCCTTGGACATCATATCGAAGAGGGTCTGGGT
JMFF038J17+           GGGGGATTGCCGGAAGTTGCGAGACTGCTCCTTGGACATCATATCGAAGAGGGTCTGGGT
                      ____________________________________________________________
consensus             GGGGGATTGCCGGAAGTTGCGAGACTGCTCCTTGGACATCATATCGAAGAGGGTCTGGGT
 
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JMSF028N21+           GGGCGGAGCCGGCGGAGGCGAAGCAGGGGTGTACGCCGGCGGCGGAGAAACGGCGGTGGC
JMSF021E11+           GGGCGGAGCCGGCGGAGGCGAAGCAGGGGTGTACGCCGGCGGCGGAGAAACGGCGGTGGC
JMSF023F15+           GGGCGGAGCCGGCGGAGGCGAAGCAGGGGTGTACGCCGGCGGCGGAGAAACGGCGGTGGC
JMFF038J17+           GGGCGGAGCCGGCGGAGGCGAAGCAGGGGTGTACGCCGGCGGCGGAGAAACGGCGGTGGC
                      ____________________________________________________________
consensus             GGGCGGAGCCGGCGGAGGCGAAGCAGGGGTGTACGCCGGCGGCGGAGAAACGGCGGTGGC
 
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JMSF028N21+           GGCGAGTTTAGCGGCAGGAAGATGATGGGAAGTAGGAGGAGGAGAAGAAAAGAAAGGGTC
JMSF021E11+           GGCGAGTTTAGCGGCAGGAAGATGATGGGAAGTAGGAGGAGGAGAAGAAAAGAAAGGGTC
JMSF023F15+           GGCGAGTTTAGCGGCAGGAAGATGATGGGAAGTAGGAGGAGGAGAAGAAAAGAAAGGGTC
JMFF038J17+           GGCGAGTTTAGCGGCAGGAAGATGATGGGAAGTAGGAGGAGGAGAAGAAAAGAAAGGGTC
                      ____________________________________________________________
consensus             GGCGAGTTTAGCGGCAGGAAGATGATGGGAAGTAGGAGGAGGAGAAGAAAAGAAAGGGTC
 
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JMSF028N21+           AGAAATGAAGCCTTGCTTGATCATAGTAGAAACTACTTGATTGTTCTTTAACTTGTTATC
JMSF021E11+           AGAAATGAAGCCTTGCTTGATCATAGTAGAAACTACTTGATTGTTCTTTAACTTGTTATC
JMSF023F15+           AGAAATGAAGCCTTGCTTGATCATAGTAGAAACTACTTGATTGTTCTTTAACTTGTTATC
JMFF038J17+           AGAAATGAAGCCTTGCTTGATCATAGTAGAAACTACTTGATTGTTCTTTAACTTGTTATC
                      ____________________________________________________________
consensus             AGAAATGAAGCCTTGCTTGATCATAGTAGAAACTACTTGATTGTTCTTTAACTTGTTATC
 
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JMSF028N21+           AGACGCCATTGGAGGAGTAAATGCAGCTTCTGAGCTTTCTCGGAGAGGGGAGT       
JMSF021E11+           AGACGCCATTGGAGGAGTAAATGCAGCTTCTGAGCTTTCTCGGAGAGGGGAGT       
JMSF023F15+           AGACGCCATTGGAGGAGTAAATGCAGCTTCTGAGCTTTCTCGGAGAGGGGAGTGGGTGGG
JMFF038J17+           AGACGCCATTGGAGGAGTAAATGCAGCTTCTGAGCTTTCTCGGAGAGGGGAGTGGGTGGG
                      ____________________________________________________________
consensus             AGACGCCATTGGAGGAGTAAATGCAGCTTCTGAGCTTTCTCGGAGAGGGGAGTGGGTGGG
 
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JMSF023F15+           TGAGGTTGGCCGGTGATCC                                         
JMFF038J17+           TGAGGTTGGCCGGTGATCCAAGAAAAGTAACCAAAATTTCAAGAACTCAAGTGATGTGAT
                      ____________________________________________________________
consensus             TGAGGTTGGCCGGTGATCCAAGAAAAGTAACCAAAATTTCAAGAACTCAAGTGATGTGAT