Contig 004605:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003I23Sequence522004605 (2)ref|XP_006294368.1|3e-33hypothetical protein CARUB_v10023386mg [Capsella rubella] gb|EOA27266.1| hypothe678005476 (2)emb|CDO97698.1|2e-47unnamed protein product [Coffea canephora]
JMFF037I14Sequence523004605 (2)ref|XP_006294368.1|5e-25hypothetical protein CARUB_v10023386mg [Capsella rubella] gb|EOA27266.1| hypothe743005476 (2)ref|XP_008438173.1|214PREDICTED: uncharacterized protein LOC103483359 [Cucumis melo]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+                      CACCTGAATGAAATTAATAAAGACATCTAAGATGGCAAGTGACCTCTCC
JMFF037I14+                            AATGAAATTAATAAAGACATCTAAGATGGCAAGTGACCTCTCC
                      ____________________________________________________________
consensus                        CACCTGAATGAAATTAATAAAGACATCTAAGATGGCAAGTGACCTCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+           A-CCTTGCTGTATGAAGCGTTCCCAACAGTAGTAACCAAGTTTACCAATCTTTCATTCCT
JMFF037I14+           ACCCTTGCTGTATGAAGCGTTCCCAACAGTAGTAACCAAGTTTACCAATCTTTCATTCCT
                      ____________________________________________________________
consensus             ACCCTTGCTGTATGAAGCGTTCCCAACAGTAGTAACCAAGTTTACCAATCTTTCATTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+           TTGTGTGTCAACTGGAGCATCATAAGTGGCAAATACAGTGACAAAGGAAACAATATCTCC
JMFF037I14+           TTGTGTGTCAACTGGAGCATCATAAGTGGCAAATACAGTGACAAAGGAAACAATATCTCC
                      ____________________________________________________________
consensus             TTGTGTGTCAACTGGAGCATCATAAGTGGCAAATACAGTGACAAAGGAAACAATATCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+           AGAACCCGAATTGCTAGAAGCTGGGAAGTGTGTTCTGTTGAGGGCCTTGTTACCTCGGCA
JMFF037I14+           AGAACCCGAATTGCTAGAAGCTGGGAAGTGTGTTCTGTTGAGGGCCTTGTTACCTCGGCA
                      ____________________________________________________________
consensus             AGAACCCGAATTGCTAGAAGCTGGGAAGTGTGTTCTGTTGAGGGCCTTGTTACCTCGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+           ATGCAGGCGATCGGGTAAACCTTGACCCGCAGCAGGTCCCAGAACCAGATGATCAAATTT
JMFF037I14+           ATGCAGGCGATCGGGTAAACCTTGACCCGCAGCAGGTCCCAGAACCAGATGATCAAATTT
                      ____________________________________________________________
consensus             ATGCAGGCGATCGGGTAAACCTTGACCCGCAGCAGGTCCCAGAACCAGATGATCAAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+           CTTCTTCTTCAGCTCATTCTGCCCACTCACACGCTGCACGTCTTCAGGAACCTTCCGGCC
JMFF037I14+           CTTCTTCTTCAGCTCATTCTGCCCACTCACACGCTGCACGTCTTCAGGANCCTTCCGGCC
                      ____________________________________________________________
consensus             CTTCTTCTTCAGCTCATTCTGCCCACTCACACGCTGCACGTCTTCAGGAACCTTCCGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+           CTGTTGCTGCAGCTCTAAAACTGAAAGAAGATGAGGCAGAAGGAATAGAAGCGGCAAGAA
JMFF037I14+           CTGTTGCTGCAGCTCTAAAACTGAAAGAAGATGAGGCAGAAGGAATAGAAGCGGCAAGAA
                      ____________________________________________________________
consensus             CTGTTGCTGCAGCTCTAAAACTGAAAGAAGATGAGGCAGAAGGAATAGAAGCGGCAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+           AAAGAGGAATCGGCGCCACCCGCTGCACACTCTCTTCGTTGACATTCGTCAGAAAGTTGC
JMFF037I14+           AAAGAGGAATCGGCGCCACCCGCTGCACACTCTCTTCGTTGACATTCGTCAGAAAGTTGC
                      ____________________________________________________________
consensus             AAAGAGGAATCGGCGCCACCCGCTGCACACTCTCTTCGTTGACATTCGTCAGAAAGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003I23+           CGTCTTTGCTATATTCGCCTCCGGCAAGTAGACGACGCTGCTGTTGTGTGAACT      
JMFF037I14+           CGTCTTTGCTATATTCGCCTCCGGCAAGTAGACGACGCTGCTGTTGTGTGAACTGATTTC
                      ____________________________________________________________
consensus             CGTCTTTGCTATATTCGCCTCCGGCAAGTAGACGACGCTGCTGTTGTGTGAACTGATTTC