Contig 004596:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034O11Sequence487004596 (3)611004596 (3)ref|XP_006387189.1|2e-10hypothetical protein POPTR_1578s00200g, partial [Populus trichocarpa] gb|ERP4610
JMSF001L12Sequence320004596 (3)713023425ref|XP_009628123.1|1e-07PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to

Alignment

This contig is upended


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rJMFF034O11-                   GGAAATATACCACCAACATTATTTACAGGTAAATCAATACAGGCACCTTCG
                      ____________________________________________________________
consensus                      GGAAATATACCACCAACATTATTTACAGGTAAATCAATACAGGCACCTTCG
 
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rJMFF034O11-          ACAATCACGAGAGTATACAAAATGGCAGCTTATATTTAGCCTCTAGCCAACTAAAAAAAC
                      ____________________________________________________________
consensus             ACAATCACGAGAGTATACAAAATGGCAGCTTATATTTAGCCTCTAGCCAACTAAAAAAAC
 
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rJMFF034O11-          ATATGTTAAGCTCCTCCACACCATTTCTTGATAGAAAAAAACACCACCTATTGAAATCAG
                      ____________________________________________________________
consensus             ATATGTTAAGCTCCTCCACACCATTTCTTGATAGAAAAAAACACCACCTATTGAAATCAG
 
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rJMFF034O11-          ACTGTCGCAGCTCAGGATAATAATTTGTAATATCTAGACTAAATTTCTTAACCGGTCCAG
                      ____________________________________________________________
consensus             ACTGTCGCAGCTCAGGATAATAATTTGTAATATCTAGACTAAATTTCTTAACCGGTCCAG
 
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rJMFF034O11-          CACGAGATAAGAGAATATTATTTATTATGTCAACGAGAGTTCTGCCTTCATCATTGTGAC
                      ____________________________________________________________
consensus             CACGAGATAAGAGAATATTATTTATTATGTCAACGAGAGTTCTGCCTTCATCATTGTGAC
 
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rJMFF034O11-          CCTGTTGGTCACTATTTGANGAACTCAAGACTCCCATGCTGCCTCCAAACATTATTCCAG
                      ____________________________________________________________
consensus             CCTGTTGGTCACTATTTGANGAACTCAAGACTCCCATGCTGCCTCCAAACATTATTCCAG
 
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rJMFF034O11-          TGAGTTGAGAGTAGAGCAGTTCTGGACTTCTGGCAGCATCTCTGGTGGGCAAACATTCCA
JMSF001L12+                                                      GGTGGGCAAACATTCCA
JMFF034O11+                                      TTCTGGCAGCATCTCTGGTGGGCAAACATTCCA
                      ____________________________________________________________
consensus             TGAGTTGAGAGTAGAGCAGTTCTGGACTTCTGGCAGCATCTCTGGTGGGCAAACATTCCA
 
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rJMFF034O11-          AAATTATGTGCTTTACCTCTAGCGGGAGAGGACTTATTAAATCCCTACTTGCATCCGCTA
JMSF001L12+           AAATTATGTGCTTTACCTCTAGCGGGAGAGGACTTATTAAATCCCTACTTGCATCCGCTA
JMFF034O11+           AAATTATGTGCTTTACCTCTAGCGGGAGAGGACTTATTAAATCCCTACTTGCATCCGCTA
                      ____________________________________________________________
consensus             AAATTATGTGCTTTACCTCTAGCGGGAGAGGACTTATTAAATCCCTACTTGCATCCGCTA
 
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rJMFF034O11-          CGGTGGGAGCCATTAAATTTATGCGTCACTCGAAATCAAAAGCTAAAATCCTTCTATTAT
JMSF001L12+           CGGTGGGAGCCATTAAATTTATGCGTCACTCGAAATCAAAAGCTAAAATCCTTCTATTAT
JMFF034O11+           CGGTGGGAGCCATTAAATTTATGCGTCACTCGAAATCAAAAGCTAAAATCCTTCTATTAT
                      ____________________________________________________________
consensus             CGGTGGGAGCCATTAAATTTATGCGTCACTCGAAATCAAAAGCTAAAATCCTTCTATTAT
 
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rJMFF034O11-          AACTCTAATGTCTGGTTTGGTTTGGGCCTTTGTGGGTTAGGAAAGCCGAAGGGAAACGGA
JMSF001L12+           AACTCTAATGTCTGGTTTGGTTTGGGCCTTTGTGGGTTAGGAAAGCNGAAGGGAAACGGA
JMFF034O11+           AACTCTAATGTCTGGTTTGGTTTGGGCCTTTGTGGGTTAGGAAAGCCGAAGGGAAACGGA
                      ____________________________________________________________
consensus             AACTCTAATGTCTGGTTTGGTTTGGGCCTTTGTGGGTTAGGAAAGCCGAAGGGAAACGGA
 
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rJMFF034O11-          GCAGAGTAGCAGACGCCAGA                                        
JMSF001L12+           GCAGAGTAGCAGACGCCAGACGGAGAAGACTAAGGCCGGCAGCCGGTGGAG         
JMFF034O11+           GCAGAGTAGCAGACGCCAGACGGAGAAGACTAAGGCCGGCAGCCGGTGGAGACTGGAGAA
                      ____________________________________________________________
consensus             GCAGAGTAGCAGACGCCAGACGGAGAAGACTAAGGCCGGCAGCCGGTGGAGACTGGAGAA
 
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JMFF034O11+           TCGCGGTGGAGAGACAGAGAGAGTGGAGACGGAGAGACTGCTGAGTCGCAGGGCTGAACT
                      ____________________________________________________________
consensus             TCGCGGTGGAGAGACAGAGAGAGTGGAGACGGAGAGACTGCTGAGTCGCAGGGCTGAACT