Contig 004567:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027P17Sequence533004567 (5)ref|XP_009804995.1|4e-41PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr424008333 (6)gb|ABK93811.1|3e-55unknown [Populus trichocarpa]
JMFF037H17Sequence557004567 (5)ref|XP_009804995.1|4e-45PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr778008333 (6)ref|XP_011073724.1|4e-120PREDICTED: 3-isopropylmalate dehydratase large subunit [Sesamum indicum]
JMFF044K11Sequence631004567 (5)ref|XP_009804995.1|7e-64PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr614008333 (6)ref|XP_008679970.1|1e-76PREDICTED: 3-isopropylmalate dehydratase large subunit-like isoform X2 [Zea may
JMSF021L15Sequence699004567 (5)ref|XP_009804995.1|2e-86PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr767008333 (6)ref|XP_010262459.1|9e-124PREDICTED: 3-isopropylmalate dehydratase large subunit [Nelumbo nucifera]
JMSF036H01Sequence655004567 (5)ref|XP_009804995.1|4e-109PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr490008333 (6)ref|XP_010262459.1|1e-65PREDICTED: 3-isopropylmalate dehydratase large subunit [Nelumbo nucifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF036H01+ GGTATGACCNTCTTG
                      ____________________________________________________________
consensus GGTATGACCNTCTTG
 
. : . : . : . : . : . :
JMSF036H01+ GGCAAGTGCCACATGGCAGACACCTTTGTAGTCCGGGTTGGCCCGAAAATTTCCAAGATC
                      ____________________________________________________________
consensus GGCAAGTGCCACATGGCAGACACCTTTGTAGTCCGGGTTGGCCCGAAAATTTCCAAGATC
 
. : . : . : . : . : . :
JMSF036H01+ CTTGATGTCATAAAAGTACTTAATATTTTGCTCAGTGCAGAACTCCCTCAAGATATCCAC
JMSF021L15+ TGATGTCATAAAAGTACTTAATATTTTGCTCAGTGCAGAACTCCCTCAAGATATCCAC
                      ____________________________________________________________
consensus CTTGATGTCATAAAAGTACTTAATATTTTGCTCAGTGCAGAACTCCCTCAAGATATCCAC
 
. : . : . : . : . : . :
JMSF036H01+ ATTACGGTTAGCTCTTTCATCACTTGTAAATATATAGTGGTCAGGTATGATAACAACCTT
JMSF021L15+ ATTACGGTTAGCTCTTTCATCACTTGTAAATATATAGTGGTCAGGTATGATAACAACCTT
JMFF044K11+ TAAATATATAGTGGTCAGGTATGATAACAACCTT
                      ____________________________________________________________
consensus ATTACGGTTAGCTCTTTCATCACTTGTAAATATATAGTGGTCAGGTATGATAACAACCTT
 
. : . : . : . : . : . :
JMSF036H01+ TTCACGATCCCAGACCTTAGCATCTTGCCCGAACTCTTTCTTGAAAATTCCAATAGAACC
JMSF021L15+ TTCACGATCCCAGACCTTAGCATCTTGCCCGAACTCTTTCTTGAAAATTCCAATAGAACC
JMFF044K11+ TTCACGATCCCAGACCTTAGCATCTTGCCCGAACTCTTTCTTGAAAATTCCAATAGAACC
JMFF037H17+ TTGAAAATTCCAATAGAACC
                      ____________________________________________________________
consensus TTCACGATCCCAGACCTTAGCATCTTGCCCGAACTCTTTCTTGAAAATTCCAATAGAACC
 
. : . : . : . : . : . :
JMSF036H01+ TGGTCCACAGACATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
JMSF021L15+ TGGTCCACAGACATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
JMFF044K11+ TGGTCCACAGAGATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
JMFF037H17+ TGGTCCACAGAGATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
JMFF027P17+ CCACAGACATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
                      ____________________________________________________________
consensus TGGTCCACAGACATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
 
. : . : . : . : . : . :
JMSF036H01+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
JMSF021L15+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
JMFF044K11+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
JMFF037H17+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
JMFF027P17+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
                      ____________________________________________________________
consensus GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
 
. : . : . : . : . : . :
JMSF036H01+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
JMSF021L15+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
JMFF044K11+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
JMFF037H17+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
JMFF027P17+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
                      ____________________________________________________________
consensus CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
 
. : . : . : . : . : . :
JMSF036H01+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
JMSF021L15+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
JMFF044K11+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
JMFF037H17+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
JMFF027P17+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
                      ____________________________________________________________
consensus AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
 
. : . : . : . : . : . :
JMSF036H01+ AGCAGAGAACCCCACATCTTTCT---TGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
JMSF021L15+ AGCAGAGAACCCCACATCTTTCTGCTTGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
JMFF044K11+ AGCAGAGAACCCCACATCTTTCTGCTTGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
JMFF037H17+ AGCAGAGAACCCCACATCTTTCTGCTTGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
JMFF027P17+ AGCAGAGAACCCCACATCTTTCT---TGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
                      ____________________________________________________________
consensus AGCAGAGAACCCCACATCTTTCTGCTTGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
 
. : . : . : . : . : . :
JMSF036H01+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
JMSF021L15+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
JMFF044K11+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
JMFF037H17+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
JMFF027P17+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
                      ____________________________________________________________
consensus AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
 
. : . : . : . : . : . :
JMSF036H01+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGG
JMSF021L15+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
JMFF044K11+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
JMFF037H17+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
JMFF027P17+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
                      ____________________________________________________________
consensus AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
 
. : . : . : . : . : . :
JMSF021L15+ CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
JMFF044K11+ CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
JMFF037H17+ CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
JMFF027P17+ CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
                      ____________________________________________________________
consensus CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
 
. : . : . : . : . : . :
JMSF021L15+ GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCAC
JMFF044K11+ GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCACGTTTTTTCTTCTTCT
JMFF037H17+ GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCACGTTTTTTCTTCTTCT
JMFF027P17+ GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCACGTTTTTTCTTCTTCTTCCTC
                      ____________________________________________________________
consensus GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCACGTTTTTTCTTCTTCTTCCTC