Contig 004564:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013A12Sequence716004564 (6)ref|XP_009800304.1|6e-68PREDICTED: copper transporter 5 [Nicotiana sylvestris]
JMFF027C10Sequence547004564 (6)ref|XP_009800304.1|6e-51PREDICTED: copper transporter 5 [Nicotiana sylvestris]715004564 (6)ref|XP_009800304.1|5e-68PREDICTED: copper transporter 5 [Nicotiana sylvestris]
JMFN004J02Sequence618004564 (6)ref|XP_009800304.1|3e-62PREDICTED: copper transporter 5 [Nicotiana sylvestris]
JMFN034I24Sequence623004564 (6)ref|XP_009800304.1|4e-62PREDICTED: copper transporter 5 [Nicotiana sylvestris]
JMFN038B15Sequence618004564 (6)ref|XP_009800304.1|7e-61PREDICTED: copper transporter 5 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF027C10- CATTCCGTAACGCACAATAATAATACAAGTTAGGAGTAATAGAAATTGCAATTT
rJMFF013A12- ATTCCGTAACGCACAATAATAATACAAGTTAGGAGTAATAGAAATTGCAATTT
                      ____________________________________________________________
consensus CATTCCGTAACGCACAATAATAATACAAGTTAGGAGTAATAGAAATTGCAATTT
 
. : . : . : . : . : . :
rJMFF027C10- CTAGAAAAGCAAAAAAAGATAAAATAGAAAATGAAAAACAGTTTCAATCCATTCAGAATA
rJMFF013A12- CTAGAAAAGCAAAAAAAGATAAAATAGAAAATGAAAAACAGTTTCAATCCATTCAGAATA
                      ____________________________________________________________
consensus CTAGAAAAGCAAAAAAAGATAAAATAGAAAATGAAAAACAGTTTCAATCCATTCAGAATA
 
. : . : . : . : . : . :
rJMFF027C10- TATATATTGTATATATACATTAATACATATGACGATAATAGATTAAGGTTGGGGATTGAG
rJMFF013A12- TATATATTGTATATATACATTAATACATATGACGATAATAGATTAAGGTTGGGGATTGAG
JMFN038B15+ ATATGATGATAATTGATTAAGGTGGGGGATTGAG
JMFN004J02+ GGGATTGAG
                      ____________________________________________________________
consensus TATATATTGTATATATACATTAATACATATGACGATAATAGATTAAGGTTGGGGATTGAG
 
. : . : . : . : . : . :
rJMFF027C10- ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
rJMFF013A12- ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
JMFN038B15+ ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
JMFN004J02+ ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
JMFN034I24+ TTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
                      ____________________________________________________________
consensus ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
 
. : . : . : . : . : . :
rJMFF027C10- TCCTCGCCACCGCTCCGGAAGTGCAGGTACCCCACGGAGAGGCCCACCACGATGGCGATC
rJMFF013A12- TCCTCGCCACCGCTCCGGAAGTGCAGGTACCCCACGGAGAGGCCCACCACGATGGCGATC
JMFN038B15+ TCCTCGCCGCCGCTCCGGAAGAGCAGGTACCCCACGGAGAGGCCCACCACGACGGCGATC
JMFN004J02+ TCCTCGCCGCCGCTCCGGAAGAGCAGGTACCCCACGGAGAGGCCCACCACGACGGCGATC
JMFN034I24+ TCCTCGCCGCCGCTCCGGAAGAGCAGGTACCCCACGGAGAGGCCCACCACGACGGCGATC
JMFF027C10+ CACGATGGCGATC
                      ____________________________________________________________
consensus TCCTCGCCGCCGCTCCGGAAGAGCAGGTACCCCACGGAGAGGCCCACCACGATGGCGATC
 
. : . : . : . : . : . :
rJMFF027C10- AGCACGCCGGCGTTGAACGACATGATGGCTAGCATCAGCATGTACCCGATCGCGGAGTTG
rJMFF013A12- AGCACGCCGGCGTTGAACGACATGATGGCTAGCATCAGCATGTACCCGATCGCGGAGTTG
JMFN038B15+ AGCACGCCCGCGTTGAACGACATGACGGCCAGCATCAGCATGTACCCGATCGCGGAGTTG
JMFN004J02+ AGCACGCCCGCGTTGAACGACATGACGGCCAGCATCAGCATGTACCCGATCGCGGAGTTG
JMFN034I24+ AGCACGCCCGCGTTGAACGACATGACGGCCAGCATCAGCATGTACCCGATCGCGGAGTTG
JMFF027C10+ AGCACGCCGGCGTTGAACGACATGATGGCTAGCATCAGCATGTACCCGATCGCGGAGTTG
                      ____________________________________________________________
consensus AGCACGCCGGCGTTGAACGACATGATGGCTAGCATCAGCATGTACCCGATCGCGGAGTTG
 
. : . : . : . : . : . :
rJMFF027C10- ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGG-----
rJMFF013A12- ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGG-----
JMFN038B15+ ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGGTCAAG
JMFN004J02+ ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGGTCAAG
JMFN034I24+ ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGGTCAAG
JMFF027C10+ ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGG-----
                      ____________________________________________________________
consensus ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGG-----
 
. : . : . : . : . : . :
rJMFF027C10- -TCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGCGGCTCGGCTGAGACGGTGGCGGAACC
rJMFF013A12- -TCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGCGGCTCGGCTGAGACGGTGGCGGAACC
JMFN038B15+ GTCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGGGGCTTGGCTGAGACGATGGCGGAACC
JMFN004J02+ GTCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGGGGCTTGGCTGAGACGATGGCGGAACC
JMFN034I24+ GTCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGGGGCTTGGCTGAGACGATGGCGGAACC
JMFF027C10+ -TCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGCGGCTCGGCTGAGACGGTGGCGGAACC
                      ____________________________________________________________
consensus -TCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGCGGCTCGGCTGAGACGGTGGCGGAACC
 
. : . : . : . : . : . :
rJMFF027C10- GAGTTGGCGCCAGCGAAGCCCTTCTTGGCGCTGAGGGAGGAGATTAGCTTGAACCTCTGG
rJMFF013A12- GAGTTGGCGCCAGCGAAGCCCTTCTTGGCGCTGAGGGAGGAGATTAGCTTGAACCTCTGG
JMFN038B15+ GAGCAGGGGCCGTCGAAGCCCTTCTTGGCGCTGAGGGTGGAGATCAGCTTGAACCGCTGG
JMFN004J02+ GAGCAGGGGCCGTCGAAGCCCTTCTTGGCGCTGAGGGTGGAGATCAGCTTGAACCGCTGG
JMFN034I24+ GAGCAGGGGCCGTCGAAGCCCTTCTTGGCGCTGAGGGTGGAGATCAGCTTGAACCGCTGG
JMFF027C10+ GAGTTGGCGCCAGCGAAGCCCTTCTTGGCGCTGAGGGAGGAGATTAGCTTGAACCTCTGG
                      ____________________________________________________________
consensus GAGTTGGCGCCAGCGAAGCCCTTCTTGGCGCTGAGGGAGGAGATTAGCTTGAACCTCTGG
 
. : . : . : . : . : . :
rJMFF027C10- CGGCCCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTTAGG
rJMFF013A12- CGGCCCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTTAGG
JMFN038B15+ CGGCGCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTGAGG
JMFN004J02+ CGGCGCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTGAGG
JMFN034I24+ CGGCGCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTGAGG
JMFF027C10+ CGGCCCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTTAGG
                      ____________________________________________________________
consensus CGGCCCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTTAGG
 
. : . : . : . : . : . :
rJMFF027C10- GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACCTTTTTGCCC
rJMFF013A12- GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACCTTTTTGCCC
JMFN038B15+ GTGTAGCTGGTCCGAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACGTTTTTGCCC
JMFN004J02+ GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACGTTTTTGCCC
JMFN034I24+ GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACGTTTTTGCCC
JMFF027C10+ GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACCTTTTTGCCC
                      ____________________________________________________________
consensus GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACCTTTTTGCCC
 
. : . : . : . : . : . :
rJMFF027C10- CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
rJMFF013A12- CAGTAGAANGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
JMFN038B15+ CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
JMFN004J02+ CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
JMFN034I24+ CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
JMFF027C10+ CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
                      ____________________________________________________________
consensus CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
 
. : . : . : . : . : . :
rJMFF027C10- GAAATCG
rJMFF013A12- GAAATCGGA
JMFN038B15+ GAAATCGGAGAGAGGAGAGGGGTAACCGGTAGGTTTGGTGACCG
JMFN004J02+ GAAATCGGAGAGAGGAGAGGGGTAACCGGTAGGTTTGGTGACCGCTTGCCGCCGGGAATG
JMFN034I24+ GAAATCGGAGAGAGGAGAGGGGTAACCGGTAGGTTTGGTGACCGCTTGCCGCCGGGAATG
JMFF027C10+ GAAATCGGAGAGAGGAGAGGAGTAGCCGGTAGGTTTGGTGACCGCCGGCCGCCGGGAAAG
                      ____________________________________________________________
consensus GAAATCGGAGAGAGGAGAGGGGTAACCGGTAGGTTTGGTGACCGCTTGCCGCCGGGAATG
 
. : . : . : . : . : . :
JMFN004J02+ GAAGAGAGG
JMFN034I24+ GAAGAGAGGGGGGTGGTGG
JMFF027C10+ GAAGAGAGGGGAGTGGTGGTGGTGGAGTTGAATTCTTGAAGATAAGAAAGGGGGTGCGTT
                      ____________________________________________________________
consensus GAAGAGAGGGGGGTGGTGGTGGTGGAGTTGAATTCTTGAAGATAAGAAAGGGGGTGCGTT