Contig 004560:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001F16Sequence610004560 (3)ref|XP_007210357.1|7e-101hypothetical protein PRUPE_ppa001580mg [Prunus persica] gb|EMJ11556.1| hypotheti718005534 (8)ref|XP_009603996.1|2e-56PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]
JMFF025G20Sequence513004560 (3)ref|XP_007210357.1|4e-95hypothetical protein PRUPE_ppa001580mg [Prunus persica] gb|EMJ11556.1| hypotheti240005534 (8)ref|XP_009603996.1|8e-14PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]
JMFF034G09Sequence615004560 (3)ref|XP_007210357.1|1e-113hypothetical protein PRUPE_ppa001580mg [Prunus persica] gb|EMJ11556.1| hypotheti707005534 (8)ref|XP_009603996.1|1e-42PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF034G09+                ACATAAAGTAATAATATTTCGCTGCAGATCTCCTTTCAAGCACTGAAAATGCCAC
JMFF001F16+                                                           TGAAAATGCCAC
                      ____________________________________________________________
consensus                  ACATAAAGTAATAATATTTCGCTGCAGATCTCCTTTCAAGCACTGAAAATGCCAC
 
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JMFF034G09+           ATGCCCCTCGATCTTCGACATGATCATCAGAATGGTTGGAAGAACATACAGGAAAATCTT
JMFF001F16+           ATGCCCCTCGATCTTCGACATGATCATCAGAATGGTTGGAAGAACATACAGGAAAATCTT
                      ____________________________________________________________
consensus             ATGCCCCTCGATCTTCGACATGATCATCAGAATGGTTGGAAGAACATACAGGAAAATCTT
 
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JMFF034G09+           TAGAGCTAAACCCGGAAGGAAACCTTGTAGGAAAGACTTTACGAATTTCCATTCAATTAA
JMFF001F16+           T--AGCTAAACCCGGAAGGAAACCTTGTAGGAAAGACTTTACGAATTTCCATTCAATTAA
JMFF025G20+                                      TAGGAAAGACTTTACGAATTTCCATTCAATTAA
                      ____________________________________________________________
consensus             TAGAGCTAAACCCGGAAGGAAACCTTGTAGGAAAGACTTTACGAATTTCCATTCAATTAA
 
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JMFF034G09+           CGGTCTGAGGAAAGGGGCAACTTTTTCTAGACCTTCCAAATTTGCCAGTGATTGCACGAA
JMFF001F16+           CGGTCTGAGGAAAGGGGCAACTTTTTCTAGACCTTCCAAATTTGCCAGTGATTGCACGAA
JMFF025G20+           CGGTCTGAGGAAAGGGGCAACTTTTTCTAGACCTTCCAAATTTGCCAGTGATTGCACGAA
                      ____________________________________________________________
consensus             CGGTCTGAGGAAAGGGGCAACTTTTTCTAGACCTTCCAAATTTGCCAGTGATTGCACGAA
 
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JMFF034G09+           GGCGATAGGTATCAAGTAGAAAAAGACCAAAGCAAAAACCGATATCGCTATCACCAATCT
JMFF001F16+           GGCGATAGGTATCAAGTAGAAAAAGACCAAAGCAAAAACCGATATCGCTATCACCAATCT
JMFF025G20+           GGCGATAGGTATCAAGTAGAAAAAGACCAAAGCAAAAACCGATATCGCTATCACCAATCT
                      ____________________________________________________________
consensus             GGCGATAGGTATCAAGTAGAAAAAGACCAAAGCAAAAACCGATATCGCTATCACCAATCT
 
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JMFF034G09+           CCGGATGCTCAGCGAAACGAATGATATCGATAGGTTCTTCCAGAATATATCCCGAGGCTC
JMFF001F16+           CCGGATGCTCAGCGAAACGAATGATATCGATAGGTTCTTCCAGAATATATCCCGAGGCTC
JMFF025G20+           CCGGATGCTCAGCGAAACGAATGATATCGATAGGTTCTTCCAGAATATATCCCGAGGCTC
                      ____________________________________________________________
consensus             CCGGATGCTCAGCGAAACGAATGATATCGATAGGTTCTTCCAGAATATATCCCGAGGCTC
 
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JMFF034G09+           AGGAGCCCAATTCGTTAACCACAGCGTGGGGTTCTTACTTTGTTGAGTCTGGGCACAAAC
JMFF001F16+           AGGAGCCCAATTCGTTAACCACAGCGTGGGGTTCTTACTTTGTTGAGTCTGGGCACAAAC
JMFF025G20+           AGGAGCCCAATTCGTTAACCACAGCGTGGGGTTCTTACTTTGTTGAGTCTGGGCACAAAC
                      ____________________________________________________________
consensus             AGGAGCCCAATTCGTTAACCACAGCGTGGGGTTCTTACTTTGTTGAGTCTGGGCACAAAC
 
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JMFF034G09+           GGCTGCCCCCCATCTTGAATCGAACGATACAAAGGCAGCTGGAATGATACACTTCGGGTC
JMFF001F16+           GGCTGCCCCCCATCTTGAATCGAACGATACAAAGGCAGCTGGAATGATACACTTCGGGTC
JMFF025G20+           GGCTGCCCCCCATCTTGAATCGAACGATACAAAGGCAGCTGGAATGATACACTTCGGGTC
                      ____________________________________________________________
consensus             GGCTGCCCCCCATCTTGAATCGAACGATACAAAGGCAGCTGGAATGATACACTTCGGGTC
 
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JMFF034G09+           CTTAAGAATCTTCTCCCGCTCTATTGTCAACATTCTGTCAAACTCTTTAATCTGGCGTTT
JMFF001F16+           CTTAAGAATCTTCTCCCGCTCTATTGTCAACATTCTGTCAAACTCTTTAATCTGGCGTTT
JMFF025G20+           CTTAAGAATCTTCTCCCGCTCTATTGTCAACATTCTGTCAAACTCTTTAATCTGGCGTTT
                      ____________________________________________________________
consensus             CTTAAGAATCTTCTCCCGCTCTATTGTCAACATTCTGTCAAACTCTTTAATCTGGCGTTT
 
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JMFF034G09+           ATAGTACTCAACCGAATCGACTTTCTTGCCCCAAAGTCCAAGGAAGCCTGTCT       
JMFF001F16+           ATAGTACTCAACCGAATCGACTTTCTTGCCCCAAAGTCCAAGGAAGCCTGTCTTACTGGT
JMFF025G20+           ATAGTACTCAACCGAATCGACTTTCTTGCCCCAAAGTCCAAGGAAGCCTGTCTTACTGGT
                      ____________________________________________________________
consensus             ATAGTACTCAACCGAATCGACTTTCTTGCCCCAAAGTCCAAGGAAGCCTGTCTTACTGGT
 
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JMFF001F16+           CGGCCTCTTGCCCGGATTTCTTTCGAGTTTAAGCTGGTTATAATCCAGCCAATTTTGAAG
JMFF025G20+           CGGCCTCTTGCCCGGATTTCTTTCGAGTTTAAGCTGGTTATAATCCAGCCAATTTTGAAG
                      ____________________________________________________________
consensus             CGGCCTCTTGCCCGGATTTCTTTCGAGTTTAAGCTGGTTATAATCCAGCCAATTTTGAAG