Contig 004549:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF022D12-                                                       AAACTTTAAGTGACA
                      ____________________________________________________________
consensus                                                          AAACTTTAAGTGACA
 
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rJMFF022D12-          AAAACAAAAATAAATATCCCAAATTAACACAGCAAATACCTGGCTAAACCCAAGTCAGGC
                      ____________________________________________________________
consensus             AAAACAAAAATAAATATCCCAAATTAACACAGCAAATACCTGGCTAAACCCAAGTCAGGC
 
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rJMFF022D12-          AAAGAAAATCTGGATATATTCCAAAATTTGAACACACCTCTAAATAACAATAAATATGAT
                      ____________________________________________________________
consensus             AAAGAAAATCTGGATATATTCCAAAATTTGAACACACCTCTAAATAACAATAAATATGAT
 
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rJMFF022D12-          CATCATTTATCGATCATGTTGTTCTTTGCCTAAGATTGACCTACTAGTATCGTCCAATGC
rJMSF040D12-                                                            CGTCCAATGC
                      ____________________________________________________________
consensus             CATCATTTATCGATCATGTTGTTCTTTGCCTAAGATTGACCTACTAGTATCGTCCAATGC
 
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rJMFF022D12-          CCCAAACTCTGATGACACCGTCTGTATACCCACTGAAAAGAGTGCTCCCGTCGGCACTCC
rJMSF040D12-          CCCAAACTCTGATGACACCGTCTGTATACCCACTGAAAAGAGTGCTCCCGTCGGCACTCC
                      ____________________________________________________________
consensus             CCCAAACTCTGATGACACCGTCTGTATACCCACTGAAAAGAGTGCTCCCGTCGGCACTCC
 
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rJMFF022D12-          AGCTCAAACTGGTGCAGAATATCACCTTGTTTTTGGAAGAGGTATTTCCTTCCGAAGCCA
rJMSF040D12-          AGCTCAAACTGGTGCAGAATATCACCTTGTTTTTGGAAGAGGTATTTCCTTCCGAAGCCA
                      ____________________________________________________________
consensus             AGCTCAAACTGGTGCAGAATATCACCTTGTTTTTGGAAGAGGTATTTCCTTCCGAAGCCA
 
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rJMFF022D12-          ATTCACTCTCCTGCTTAAGATCAACCTTGAGGTCCACCACAATGCTCTTGCTCTCCAAAT
rJMSF040D12-          ATTCACTCTCCTGCTTAAGATCAACCTTGAGGTCCACCACAATGCTCTTGCTCTCCAAAT
                      ____________________________________________________________
consensus             ATTCACTCTCCTGCTTAAGATCAACCTTGAGGTCCACCACAATGCTCTTGCTCTCCAAAT
 
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rJMFF022D12-          CCCAGATCTTAATGCTAGACTCTGTAGCGGCACAGAGCCAGTACCTATTGGGGCTGAAGC
rJMSF040D12-          CCCAGATCTTAATGCTAGACTCTGTAGCGGCACAGAGCCAGTACCTATTGGGGCTGAAGC
                      ____________________________________________________________
consensus             CCCAGATCTTAATGCTAGACTCTGTAGCGGCACAGAGCCAGTACCTATTGGGGCTGAAGC
 
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rJMFF022D12-          AGAGGGCATGAATAATTGATCCAGCTTCAAGGGAGTAAAGTCTCTTGCCCTCAGCCAAAT
rJMSF040D12-          AGAGGGCATGAATAATTGATCCAGCTTCAAGGGAGTAAAGTCTCTTGCCCTCAGCCAAAT
                      ____________________________________________________________
consensus             AGAGGGCATGAATAATTGATCCAGCTTCAAGGGAGTAAAGTCTCTTGCCCTCAGCCAAAT
 
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rJMFF022D12-          CCCAGAGCAGGATCACTCCATCCTTTCCTCCGCTAGCACAAAGCGAGCCATCAGGCGACA
rJMSF040D12-          CCCAGAGCAGGATCACTCCATCCTTTCCTCCGCTAGCACAAAGCGAGCCATCAGGCGACA
JMFN004J15+                                                 CAAAGCGAGCCATCAGGCGACA
JMSF040D12+                                                                      A
                      ____________________________________________________________
consensus             CCCAGAGCAGGATCACTCCATCCTTTCCTCCGCTAGCACAAAGCGAGCCATCAGGCGACA
 
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rJMFF022D12-          CAGAAACAGTGTTCACATAGCCAGTGTGCCCAGCTAGAGTAGACCGAAGCTTGCAGTTGG
rJMSF040D12-          CAGAAACAGTGTTCACATAGCCAGTGTGCCCAGCTAGAGTAGACCGAAGCTTGCAGTTGG
JMFN004J15+           CAGAAACAGTGTTCACATAGCCAGTGTGCCCAGCTAGAGTAGACCGAAGCTTGCAGTTGG
JMSF040D12+           CAGAAACAGTGTTCACATAGCCAGTGTGCCCAGCTAGAGTAGACCGAAGCTTGCAGTTGG
                      ____________________________________________________________
consensus             CAGAAACAGTGTTCACATAGCCAGTGTGCCCAGCTAGAGTAGACCGAAGCTTGCAGTTGG
 
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rJMFF022D12-          ACAGATTCCAGATTTTCACGGTTCGGTCCCAAGACGCAGACACGATGGTCGGCTGCAGAG
rJMSF040D12-          ACAGATTCCAGATTTTCACGGTTCGGTCCCAAGACGCAGACACGATGGTCGGCTGCAGAG
JMFN004J15+           ACAGATTCCAGATTTTCACGGTTCGGTCCCAAGACGCAGACACGATGGTCGGCTGCAGAG
JMSF040D12+           ACAGATTCCAGATTTTCACGGTTCGGTCCCAAGACGCAGACACGATGGTCGGCTGCAGAG
                      ____________________________________________________________
consensus             ACAGATTCCAGATTTTCACGGTTCGGTCCCAAGACGCAGACACGATGGTCGGCTGCAGAG
 
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rJMFF022D12-          TATTAGGGCTGAAACGCACGCAAGACACCCATTCGGAGTGCCCGTCCTGGTCCTGAATCG
rJMSF040D12-          TATTAGGGCTGAAACGCACGCAAGACACCCATTCGGAGTGCCCGTCCTGGTCCTGAATCG
JMFN004J15+           TATTAGGGCTGAAACGCACGCAAGACACCCATTCGGAGTGCCCGTCCTGGTCCTGAATCG
JMSF040D12+           TATTAGGGCTGAAACGCACGCAAGACACCCATTCGGAGTGCCCGTCCTGGTCCTGAATCG
                      ____________________________________________________________
consensus             TATTAGGGCTGAAACGCACGCAAGACACCCATTCGGAGTGCCCGTCCTGGTCCTGAATCG
 
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rJMFF022D12-          TGTACTTGCACTCA                                              
rJMSF040D12-          TGNACTTGCACTCACCCAGGGTGTTCCATAGCTTGATGGAGCGGTCGCGGG         
JMFN004J15+           TGTACTTGCACTCACCCAGGGTGTTCCATAGCTTGATGGAGCGGTCGCGGGAAGCGGAGA
JMSF040D12+           TGTACTTGCACTCACCCAGGGTGTTCCATAGCTTGATGGAGCGGTCGCGGGAAGCGGAGA
                      ____________________________________________________________
consensus             TGTACTTGCACTCACCCAGGGTGTTCCATAGCTTGATGGAGCGGTCGCGGGAAGCGGAGA
 
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JMFN004J15+           CGATCTGGCGGTTGTCGATAGAGAACGCCACGGACAGGACGTCCTTAGTGTGGCCGACGA
JMSF040D12+           CGATCTGGCGGTTGTCGATAGAGAACGCCACGGACAGGACGTCCTTAGTGTGGCCGACGA
                      ____________________________________________________________
consensus             CGATCTGGCGGTTGTCGATAGAGAACGCCACGGACAGGACGTCCTTAGTGTGGCCGACGA
 
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JMFN004J15+           AGCGGCGGGCGGTACAGCCGCTCTGAAGGTCCCAGAGGCGGAGCTCGGCGTCCCAGGAGC
JMSF040D12+           AGCGGCGGGCGGTACAGCCGCTCTGAAGGTCCCAGAGGCGGAGCTCGGCGTCCCAGGAGC
JMFF022D12+                                        TCCCAGAGGCGGAGCTCGGCGTCCCAGGAGC
                      ____________________________________________________________
consensus             AGCGGCGGGCGGTACAGCCGCTCTGAAGGTCCCAGAGGCGGAGCTCGGCGTCCCAGGAGC
 
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JMFN004J15+           CGGAGAGGGCGAACTGGCCGTCAGAGGAGAGGACGACGTCCTGGACGAAATGCGAATGGC
JMSF040D12+           CGGAGAGGGCGAACTGGCCGTCAGAGGAGAGGACGACGTCCTGGACGAAATGCGAATGGC
JMFF022D12+           CGGAGAGGGCGAACTGGCCGTCAGAGGAGAGGACGACGTCCTGGACGAAATGCGAATGGC
                      ____________________________________________________________
consensus             CGGAGAGGGCGAACTGGCCGTCAGAGGAGAGGACGACGTCCTGGACGAAATGCGAATGGC
 
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JMFN004J15+           CGGTGAGGCGGCGGCGTGGGACGCCAAATTGCGGGCCATCCTTGGTGAGAGTCCAGACAA
JMSF040D12+           CGGTGAGGCGGCGGCGTGGGACGCCAAATTGCGGGCCATCCTTGGTGAGAGTCCAGACAA
JMFF022D12+           CGGTGAGGCGGCGGCGTGGGACGCCAAATTGCGGGCCATCCTTGGTGAGAGTCCAGACAA
                      ____________________________________________________________
consensus             CGGTGAGGCGGCGGCGTGGGACGCCAAATTGCGGGCCATCCTTGGTGAGAGTCCAGACAA
 
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JMFN004J15+           TGATGGATTTGTCGCGGGAGGCGGAGACGATAAAGTCGGCATTGTCGATTGGGGCGGCGA
JMSF040D12+           TGATGGATTTGTCGCGGGAGGCGGAGACGATAAAGTCGGCATTGTCGATTGGGGCGGCGA
JMFF022D12+           TGATGGATTTGTCGCGGGAGGCGGAGACGATAAAGTCGGCATTGTCGATTGGGGCGGCGA
                      ____________________________________________________________
consensus             TGATGGATTTGTCGCGGGAGGCGGAGACGATAAAGTCGGCATTGTCGATTGGGGCGGCGA
 
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JMFN004J15+           TGGCCGTCACCCAATCGGTGTGAGCCTTCATTGTTCCACGGAGGACTAGAGATTCCTGAG
JMSF040D12+           TGGCCGTCACCCAATCGGTGTGAGCCTTCATTGTTCCACGGAGGACTAGAGATTCCTGAG
JMFF022D12+           TGGCCGTCACCCAATCGGTGTGAGCCTTCATTGTTCCACGGAGGACTAGAGATTCCTGAG
                      ____________________________________________________________
consensus             TGGCCGTCACCCAATCGGTGTGAGCCTTCATTGTTCCACGGAGGACTAGAGATTCCTGAG
 
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JMFN004J15+           CCATTTTCCGTCCCTCT                                           
JMSF040D12+           CCATTTTCCGTCCCTCT                                           
JMFF022D12+           CCATTTTCCGTCCCTCTCTTAGGGTTGCGCGGCGGAGGAAGGTTTGGGGGGAGAGAGAAA
                      ____________________________________________________________
consensus             CCATTTTCCGTCCCTCTCTTAGGGTTGCGCGGCGGAGGAAGGTTTGGGGGGAGAGAGAAA
 
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JMFF022D12+           AGGCTGAGTATGGCAAAAATATAAAGGAAAACCCTACGCTAAGCGGGCCGCTTTATGTAC
                      ____________________________________________________________
consensus             AGGCTGAGTATGGCAAAAATATAAAGGAAAACCCTACGCTAAGCGGGCCGCTTTATGTAC
 
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JMFF022D12+           TTCATAACGAAGAAGGCAATGTGATTTAGGTTATGTTCTGGAGTCGCGGTTCTCGGTTTC
                      ____________________________________________________________
consensus             TTCATAACGAAGAAGGCAATGTGATTTAGGTTATGTTCTGGAGTCGCGGTTCTCGGTTTC