Contig 004546:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021N15Sequence613004546 (2)ref|XP_009613975.1|4e-29PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ni719000527 (3)ref|XP_009786138.1|3e-47PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ni
JMFN039A24Sequence649004546 (2)ref|XP_009786138.1|2e-44PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ni

Alignment

This contig is upended


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JMFN039A24+                                                           TCAAGGTTTTGT
                      ____________________________________________________________
consensus                                                             TCAAGGTTTTGT
 
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JMFN039A24+           AGCAGCTCAATCACAGATTCTTCAGGCTGTTCTGGATCTTCAAGCTGCTCTTTGATTCTG
                      ____________________________________________________________
consensus             AGCAGCTCAATCACAGATTCTTCAGGCTGTTCTGGATCTTCAAGCTGCTCTTTGATTCTG
 
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JMFN039A24+           ATAATTTTGGTCTGCTCATCGTCAAACAAGCCTCCATACGGATCAGCCTCTTCTTCTTCT
JMFF021N15+                                                          CTCTTCTTCTTCT
                      ____________________________________________________________
consensus             ATAATTTTGGTCTGCTCATCGTCAAACAAGCCTCCATACGGATCAGCCTCTTCTTCTTCT
 
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JMFN039A24+           TCTTCTTCTTCGCCCTCTTCCCGTTCGTTATCATCATGACGGTGATGATTAGACTCGGGA
JMFF021N15+           TCTTCTTCTTCGCCCTCTTCCCGTTCGTTATCATCATGACGGTGATGATTAGACTCGGGA
                      ____________________________________________________________
consensus             TCTTCTTCTTCGCCCTCTTCCCGTTCGTTATCATCATGACGGTGATGATTAGACTCGGGA
 
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JMFN039A24+           CTGGAAGGACTCTTACTGATGTGCCTCTCGATATTGGTAACGCTATTGTAATTCGCAACG
JMFF021N15+           CTGGAAGGACTCTTACTGATGTGCCTCTCGATATTGGTAACGCTATTGTAATTCGCAACG
                      ____________________________________________________________
consensus             CTGGAAGGACTCTTACTGATGTGCCTCTCGATATTGGTAACGCTATTGTAATTCGCAACG
 
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JMFN039A24+           CCGTTGGGCGCAAAGTGAGCGTTGACTACGTCGTTGCAGTTGCGGCAGCGATTGGAATAC
JMFF021N15+           CCGTTGGGCGCAAAGTGAGCGTTGACTACGTCGTTGCAGTTGCGGCAGCGATTGGAATAC
                      ____________________________________________________________
consensus             CCGTTGGGCGCAAAGTGAGCGTTGACTACGTCGTTGCAGTTGCGGCAGCGATTGGAATAC
 
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JMFN039A24+           AACTTCTCGACGATTCCGTCGCGCCGATCCTTGAATTCATCGGCGCAGTCGACGGACGCC
JMFF021N15+           AACTTCTCGACGATTCCGTCGCGCCGATCCTTGAATTCATCGGCGCAGTCGACGGACGCC
                      ____________________________________________________________
consensus             AACTTCTCGACGATTCCGTCGCGCCGATCCTTGAATTCATCGGCGCAGTCGACGGACGCC
 
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JMFN039A24+           ACCTCAATCGCCGCCTCTATCAGCGTCCACACATCCGTTTTCGATTTCGACAGAATCAAC
JMFF021N15+           ACCTCAATCGCCGCCTCTATCAGCGTCCACACATCCGTTTTCGATTTCGACAGAATCAAC
                      ____________________________________________________________
consensus             ACCTCAATCGCCGCCTCTATCAGCGTCCACACATCCGTTTTCGATTTCGACAGAATCAAC
 
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JMFN039A24+           CGGAGCTCATCCCCGTCCATGCTTGACCAAATCCGTTGGTTAAATTTTGTTTTCACCGAA
JMFF021N15+           CGGAGCTCATCCCCGTCCATGCTTGACCAAATCCGTTGGTTAAATTTTGTTTTCACCGAA
                      ____________________________________________________________
consensus             CGGAGCTCATCCCCGTCCATGCTTGACCAAATCCGTTGGTTAAATTTTGTTTTCACCGAA
 
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JMFN039A24+           TTCTCTCAACAGAAAAATAAGATGAAAGGATTGCGCGGTTACGTCACCAGATCTGAGACT
JMFF021N15+           TTCTCTCAACAGAAAAATAAGATGAAAGGATTGCGCGGTTACGTCACCAGATCTGAGACT
                      ____________________________________________________________
consensus             TTCTCTCAACAGAAAAATAAGATGAAAGGATTGCGCGGTTACGTCACCAGATCTGAGACT
 
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JMFN039A24+           TCATGGGAGAGGCGTCATGCGATCTACAGAACGACGCCGTACTGATCCCCTTGTCGGAAC
JMFF021N15+           TCATGGGAGAGGCGTCATGCGATCTACAGAACGACGCCGTACTGATCCCCTTGTCGGAAC
                      ____________________________________________________________
consensus             TCATGGGAGAGGCGTCATGCGATCTACAGAACGACGCCGTACTGATCCCCTTGTCGGAAC
 
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JMFN039A24+           TTCGAGTTATTGTTGTTGTCCAGAG                                   
JMFF021N15+           TTCGAGTTATTGTTGTTGTCCAGAGACACTGAACCGACGAGAAGGTGGGGTGGAAGGGAA
                      ____________________________________________________________
consensus             TTCGAGTTATTGTTGTTGTCCAGAGACACTGAACCGACGAGAAGGTGGGGTGGAAGGGAA
 
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JMFF021N15+           GGGGAGGGGAGAGCTTTTAAGACTGGAATTTTGAGTTATTTTCGTTTTTACCGAATGGAC
                      ____________________________________________________________
consensus             GGGGAGGGGAGAGCTTTTAAGACTGGAATTTTGAGTTATTTTCGTTTTTACCGAATGGAC