Contig 004536:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011G07Sequence328004536 (3)ref|NP_001066582.1|2e-16Os12g0284000 [Oryza sativa Japonica Group] gb|ABA97465.1| regulator of chromosom572013649 (3)ref|XP_011071172.1|1e-78PREDICTED: ultraviolet-B receptor UVR8 [Sesamum indicum]
JMFF020O02Sequence427004536 (3)emb|CDP13270.1|4e-38unnamed protein product [Coffea canephora]634013649 (3)ref|XP_011071172.1|6e-95PREDICTED: ultraviolet-B receptor UVR8 [Sesamum indicum]
JMFS147F02Sequence607004536 (3)ref|XP_009586986.1|2e-33PREDICTED: ultraviolet-B receptor UVR8 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS147F02+ AACGAACAAGTGGCCTGCAAAACCGCATTATATAATTCAAA
                      ____________________________________________________________
consensus AACGAACAAGTGGCCTGCAAAACCGCATTATATAATTCAAA
 
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JMFS147F02+ TCAGCAGCAACATCAATTCTCAAGCCAAACATAGTTCGCTTCGAAGATACTAAAAGGTAG
                      ____________________________________________________________
consensus TCAGCAGCAACATCAATTCTCAAGCCAAACATAGTTCGCTTCGAAGATACTAAAAGGTAG
 
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JMFS147F02+ AAACACATGCCTCTAGTATCGCGAGGTCCTGTGGATCCAAATTACACCCAGTAAGGACAT
                      ____________________________________________________________
consensus AAACACATGCCTCTAGTATCGCGAGGTCCTGTGGATCCAAATTACACCCAGTAAGGACAT
 
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JMFS147F02+ GAAGGACAATGGAGGGGTTGGCAGACAACGGGAACTCCCCGGGACGAGCGTTTCCAAGAC
                      ____________________________________________________________
consensus GAAGGACAATGGAGGGGTTGGCAGACAACGGGAACTCCCCGGGACGAGCGTTTCCAAGAC
 
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JMFS147F02+ AATGCCTCTGTTGCTTTTGAAACGTGGGCACGGGAGAGGTGACGAGAGTAGCAATGGGTT
                      ____________________________________________________________
consensus AATGCCTCTGTTGCTTTTGAAACGTGGGCACGGGAGAGGTGACGAGAGTAGCAATGGGTT
 
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JMFS147F02+ GCTCGGCTATGTTACAGTATTGAACACTCGGGGTTCCACTCGCTGTGGTGTCCATGGGCA
                      ____________________________________________________________
consensus GCTCGGCTATGTTACAGTATTGAACACTCGGGGTTCCACTCGCTGTGGTGTCCATGGGCA
 
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JMFS147F02+ CTGCTCTACTCTGCAGTGCCCTAATCGAGCAGGGGAGACGAAGATCTCAACTTGTTCTTA
                      ____________________________________________________________
consensus CTGCTCTACTCTGCAGTGCCCTAATCGAGCAGGGGAGACGAAGATCTCAACTTGTTCTTA
 
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JMFS147F02+ AACTAAAAGCTGATAGAATAACTTGCAGCTTCAATCATTAAACAGAGACCGCAAGATTCC
JMFF011G07+ CATTAAACAGAGACCGCAAGATTCC
JMFF020O02+ CATTAAACAGAGACCGCAAGATTCC
                      ____________________________________________________________
consensus AACTAAAAGCTGATAGAATAACTTGCAGCTTCAATCATTAAACAGAGACCGCAAGATTCC
 
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JMFS147F02+ TCAAAACCCATGCGAAATCTT-CCCAAAACTTTCTGCCTTTGTTTGTAAAATCACCAAAA
JMFF011G07+ TCAAAACCCATGCGAAATCTTNCCCAAAATTTTCTGCCTTTGTTTGTAAAATCACCAAAA
JMFF020O02+ TCAAAACCCATGCGAAATCTT-CCCAAAATTTTNTGCCTTTGTTTGTAAAATCACCAAAA
                      ____________________________________________________________
consensus TCAAAACCCATGCGAAATCTT-CCCAAAATTTTCTGCCTTTGTTTGTAAAATCACCAAAA
 
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JMFS147F02+ ATCTGTGCAATTCTAATCAAGCACAAGTGAGTAATAGTCAGATCAAAGGGTCAATAGAAG
JMFF011G07+ ATCTGTGCAATTCTAATCAAGCACAAGTGAGTAATAGTCAGATCAAAGGGTCAATAGAAG
JMFF020O02+ ATCTGTGCAATTCTAATCAAGCACAAGTGAGTAATAGTCAGATCAAAGGGTCAATAGAAG
                      ____________________________________________________________
consensus ATCTGTGCAATTCTAATCAAGCACAAGTGAGTAATAGTCAGATCAAAGGGTCAATAGAAG
 
. : . : . : . : . : . :
JMFS147F02+ AAAAAGAGACC
JMFF011G07+ AAAAAGAGACCTTGACAGAGAAGTTTTAGAGAGAGAGAGAGAGGAGGAGAAGTTTTATAT
JMFF020O02+ AAAAAGAGACCNTGACAGAGAAGTTTTAGAGAGAGAGAGAGAGGAGGAGAAGTTTTATAT
                      ____________________________________________________________
consensus AAAAAGAGACCTTGACAGAGAAGTTTTAGAGAGAGAGAGAGAGGAGGAGAAGTTTTATAT