Contig 004525:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016L15Sequence597004525 (4)ref|XP_009794984.1|4e-102PREDICTED: ubiquitin-conjugating enzyme E2 28 [Nicotiana sylvestris]672004525 (4)ref|XP_009794984.1|1e-101PREDICTED: ubiquitin-conjugating enzyme E2 28 [Nicotiana sylvestris]
JMFF048C08Sequence309004525 (4)ref|XP_009794984.1|6e-52PREDICTED: ubiquitin-conjugating enzyme E2 28 [Nicotiana sylvestris]389024424
JMSF037F17Sequence535004525 (4)gb|KJB19043.1|1e-37hypothetical protein B456_003G082500 [Gossypium raimondii]

Alignment

This contig is upended


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rJMFF016L15-                                                          TATGTGTCCATA
                      ____________________________________________________________
consensus                                                             TATGTGTCCATA
 
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rJMFF016L15-          TCAACAATTCCAACCACAATCTTTCATTTGCAGACCAAATTTTAGCACTATTCTACACTT
                      ____________________________________________________________
consensus             TCAACAATTCCAACCACAATCTTTCATTTGCAGACCAAATTTTAGCACTATTCTACACTT
 
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rJMFF016L15-          GTCCATTGCAATGGTAGATAGATAGGACCGACAAATTTATATCTTTACATAAAACCGATG
                      ____________________________________________________________
consensus             GTCCATTGCAATGGTAGATAGATAGGACCGACAAATTTATATCTTTACATAAAACCGATG
 
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rJMFF016L15-          ATGCAGCAATGGTTGAGTTTGAGTTTTTAACCCATTGCATACTTCTGGGTCCAGCTCCTG
JMFF016L15+                                  TTTTTAACCCATTGCATACTTCTGGGTCCAGCTCCTG
                      ____________________________________________________________
consensus             ATGCAGCAATGGTTGAGTTTGAGTTTTTAACCCATTGCATACTTCTGGGTCCAGCTCCTG
 
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rJMFF016L15-          GCAGTCCCTTCATACTTGCTTCTGTCTGTCTTGTACATGTGGGCAATCTCGGGGACCAAG
JMFF016L15+           GCAGTCCCTTCATACTTGCTTCTGTCTGTCTTGTACATGTGGGCAATCTCGGGGACCAAG
                      ____________________________________________________________
consensus             GCAGTCCCTTCATACTTGCTTCTGTCTGTCTTGTACATGTGGGCAATCTCGGGGACCAAG
 
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rJMFF016L15-          GGGTCGTCTGGGTTTGGATCCGTCAAAAGCGAACAGATTGAAAGCAGCACCTTTGAGATG
JMFF016L15+           GGGTCGTCTGGGTTTGGATCCGTCAAAAGCGAACAGATTGAAAGCAGCACCTTTGAGATG
                      ____________________________________________________________
consensus             GGGTCGTCTGGGTTTGGATCCGTCAAAAGCGAACAGATTGAAAGCAGCACCTTTGAGATG
 
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JMFF048C08+                                                            CATTGCTGTTA
rJMFF016L15-          GTCAAAGCAGGGCTCCACTGGTCCTTCAAGATATCAAGGCAGATGCTACCATTGCTGTTA
JMFF016L15+           GTCAAAGCAGGGCTCCACTGGTCCTTCAAGATATCAAGGCAGATGCTACCATTGCTGTTA
                      ____________________________________________________________
consensus             GTCAAAGCAGGGCTCCACTGGTCCTTCAAGATATCAAGGCAGATGCTACCATTGCTGTTA
 
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JMSF037F17+                                            ACCTTTGGAGGCTTAAATGGATAATCA
JMFF048C08+           ATATTTGGATGAAAAACTTTCGTCTTAAAAGCAACCTTTGGAGGTTTGAATGGATAATCA
rJMFF016L15-          ATATTTGGATGAAAAACTTTCGTCTTAAAAGCAACCTTTGGAGGTTTGAATGGATAATCA
JMFF016L15+           ATATTTGGATGAAAAACTTTCGTCTTAAAAGCAACCTTTGGAGGTTTGAATGGATAATCA
                      ____________________________________________________________
consensus             ATATTTGGATGAAAAACTTTCGTCTTAAAAGCAACCTTTGGAGGTTTGAATGGATAATCA
 
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JMSF037F17+           GGGGGGAAATGAATAGTAACCAGAAACAACCCCCCTGCATATGGACTATCTGGGGGACCC
JMFF048C08+           GGGGGGAAATGAATAGTAACCAAAAACACTCCCCCAGTATATGGGCTATCTGGGGGACCC
rJMFF016L15-          GGGGGGAAATGAATAGTAACCAAAAACACTCCCCCAGTATATGGGCTATCTGGGGGACCC
JMFF016L15+           GGGGGGAAATGAATAGTAACCAAAAACACTCCCCCAGTATATGGGCTATCTGGGGGACCC
                      ____________________________________________________________
consensus             GGGGGGAAATGAATAGTAACCAAAAACACTCCCCCAGTATATGGGCTATCTGGGGGACCC
 
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JMSF037F17+           ATTATAGTTGCTTGCCAGTGAAACATGTCCTCGCCGACAAGTCCAGCGCTACATGAGGTA
JMFF048C08+           ATTATGGTTGCTTGCCAGTGAAACATGTCCTCACCAACAGGTCCAGCGCTGCAAGAGGTA
rJMFF016L15-          ATTATGGTTGCTTGCCAGTGAAACATGTCCTCACCAACAGGTCCAGCGCTGCAAGAGGTA
JMFF016L15+           ATTATGGTTGCTTGCCAGTGAAACATGTCCTCACCAACAGGTCCAGCGCTGCAAGAGGTA
                      ____________________________________________________________
consensus             ATTATGGTTGCTTGCCAGTGAAACATGTCCTCACCAACAGGTCCAGCGCTGCAAGAGGTA
 
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JMSF037F17+           GGAGGATCTTTCTGAAGATCCTTGAGCTCCTTCAAGATCCGTTTCGAAGCCAT       
JMFF048C08+           GGAGGATCTTTCTGGAGATCCTTGAGCTCCTTCAGGATCCTTTTGGAAGCCATCG     
rJMFF016L15-          GGAGGATCTTTCTGGAGATCCTTGAGCTCCTTCAGGATCCTTTTGGAAGCCATCG     
JMFF016L15+           GGAGGATCTTTCTGGAGATCCTTGAGCTCCTTCAGGATCCTTTTGGAAGCCATCGATCAG
                      ____________________________________________________________
consensus             GGAGGATCTTTCTGGAGATCCTTGAGCTCCTTCAGGATCCTTTTGGAAGCCATCGATCAG
 
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JMFF016L15+           AAGAAACTCGACGAATCAAAGAGGTTAGCGCCGATCTGACGAGAAACTCGAGACTGAAAC
                      ____________________________________________________________
consensus             AAGAAACTCGACGAATCAAAGAGGTTAGCGCCGATCTGACGAGAAACTCGAGACTGAAAC