Contig 004511:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013H24Sequence326004511 (2)703013024 (6)ref|XP_009119726.1|2e-60PREDICTED: acyl-coenzyme A thioesterase 8 isoform X1 [Brassica rapa]
JMFF030I22Sequence350004511 (2)513013024 (6)ref|XP_010479876.1|1e-24PREDICTED: acyl-coenzyme A thioesterase 8-like [Camelina sativa]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF030I22+ ANNCCCCCCNTTTTTTTAAANNAAGGCCNAAAAAAAAAAAAAAAAAGATT
JMFF013H24+ AAAAAAAAAAAAAAAAAGATT
                      ____________________________________________________________
consensus ANNCCCCCCNTTTTTTTAAANNAAGGCCNAAAAAAAAAAAAAAAAAGATT
 
. : . : . : . : . : . :
JMFF030I22+ TAAAGTACACAATGAAGGTATGGAAAAGAAACAAAAGTACAAATAGATCTGTACTCTTCA
JMFF013H24+ TAAAGTACACAATGAAGGTATGGAAAAGAAACAAAAGTACAAATAGATCTGTACTCTTCA
                      ____________________________________________________________
consensus TAAAGTACACAATGAAGGTATGGAAAAGAAACAAAAGTACAAATAGATCTGTACTCTTCA
 
. : . : . : . : . : . :
JMFF030I22+ TTTATCCAGCCAACATGGCTACATGTACTAAAAACTGTATCCTTTGATTTGTAAAAGGCT
JMFF013H24+ TTTATCCAGCCAACATGGCTACATGTACTAAAAACTGTATCCTTTGATTTGTAAAAGGCT
                      ____________________________________________________________
consensus TTTATCCAGCCAACATGGCTACATGTACTAAAAACTGTATCCTTTGATTTGTAAAAGGCT
 
. : . : . : . : . : . :
JMFF030I22+ TGATGCTTATTTCCATGGCACAATTTGAAAACCCTCGATGCTAATCATGTTTAACTCATA
JMFF013H24+ TGATGCTTATTTCCATGGCACAATTTGAAAACCCTCGATGCTAATCATGTTTAACTCATA
                      ____________________________________________________________
consensus TGATGCTTATTTCCATGGCACAATTTGAAAACCCTCGATGCTAATCATGTTTAACTCATA
 
. : . : . : . : . : . :
JMFF030I22+ CTAGCACTATCCATTAATTTAAAACAAAACAAAACAAAATAAAAATAAAAGCCATTTTGG
JMFF013H24+ CTAGCACTATCCATTAATTTAAAACAAAACAAAACAAAATAAAAATAAAAGCCATTTTGG
                      ____________________________________________________________
consensus CTAGCACTATCCATTAATTTAAAACAAAACAAAACAAAATAAAAATAAAAGCCATTTTGG
 
. : . : . : . : . : . :
JMFF030I22+ CTTTTAAAAAGCAATTCAACTTTGCATATACAGAATGCATAAGAAAAAAGCAGAAAAAGC
JMFF013H24+ CTTTTAAAAAGCAATTCAACTTTGCATATACAGAATGCATAAGAAAAAAGCAGAAAAAGC
                      ____________________________________________________________
consensus CTTTTAAAAAGCAATTCAACTTTGCATATACAGAATGCATAAGAAAAAAGCAGAAAAAGC