Contig 004508:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011I05Sequence608004508 (7)ref|XP_009620036.1|2e-105PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596
JMFF013B08Sequence126004508 (7)
JMFF013B24Sequence477004508 (7)ref|XP_009620036.1|4e-72PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596681004508 (7)ref|XP_009620036.1|1e-98PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596
JMFF026K18Sequence522004508 (7)ref|XP_009620036.1|2e-84PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596
JMSF002J17Sequence357004508 (7)ref|XP_009620036.1|3e-42PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596746004508 (7)ref|XP_009620036.1|7e-129PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF013B24- ATCTCTATTATCACTTGATAATATCCAGTTCAGTAGTCCATTCTCTAA
rJMSF002J17- TAGTCCATTCTCTAA
                      ____________________________________________________________
consensus ATCTCTATTATCACTTGATAATATCCAGTTCAGTAGTCCATTCTCTAA
 
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rJMFF013B24- TTTAATGAATAAAGAGAGTATCTTCAAGGATTTATAAAAAAAAAATATCTCAAAATAACC
rJMSF002J17- TTTAATGAATAAAGAGAGTATCTTCAAGGATTTAT-AAAAAAAAATATCTCAAAATAACC
                      ____________________________________________________________
consensus TTTAATGAATAAAGAGAGTATCTTCAAGGATTTATAAAAAAAAAATATCTCAAAATAACC
 
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rJMFF013B24- AACTTAATCAAGCAAAACAAAATTTANACACTAAAGCACTTGCCACAACAAGTAACAAAA
rJMSF002J17- AACTTAATCAAGCAAAACAAAATTTAGACACTAAAGCACTTGCCACAACAAGTAACAAAA
                      ____________________________________________________________
consensus AACTTAATCAAGCAAAACAAAATTTAGACACTAAAGCACTTGCCACAACAAGTAACAAAA
 
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rJMFF013B24- AAGTATAAATATTTCAAATAAAGTCCTGGATTATGCATGANAACAACTCTTCAACGGTTG
rJMSF002J17- AAGTATAAATATTTCAAATAAAGTCCTGGATTATGCATGAGAACAACTCTTCAACGGTTG
                      ____________________________________________________________
consensus AAGTATAAATATTTCAAATAAAGTCCTGGATTATGCATGAGAACAACTCTTCAACGGTTG
 
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rJMFF013B24- GCCTTGGCAACTCTCTCAATCTCATCCTTCTTCTTAATTGCGTAACTGTTGGAANACCCC
rJMSF002J17- GCCTTGGCAACTCTCTCAATCTCATCCTTCTTCTTAATTGCGTAACTGTTGGAAGACCCC
                      ____________________________________________________________
consensus GCCTTGGCAACTCTCTCAATCTCATCCTTCTTCTTAATTGCGTAACTGTTGGAAGACCCC
 
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rJMFF013B24- TTGGCAGCATTAATGAGTTCATCTGCAAGGCACTCAGCAATGGTCTTGATGTTCCTGAAA
rJMSF002J17- TTGGCAGCATTAATGAGTTCATCTGCAAGGCACTCAGCAATGGTCTTGATGTTCCTGAAA
JMFF011I05+ GTTCCTGAAA
                      ____________________________________________________________
consensus TTGGCAGCATTAATGAGTTCATCTGCAAGGCACTCAGCAATGGTCTTGATGTTCCTGAAA
 
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rJMFF013B24- GCACTCTGGCGGGCACCACTTGTTATGAGGTANATTGCTTGGTTCACACGACGGANAGGA
rJMSF002J17- GCACTCTGGCGGGCACCACTTGTTATGAGGTAGATTGCTTGGTTCACACGACGGAGAGGA
JMFF011I05+ GCACTCTGGCGGGCACCACTTGTTATGAGGTAGATTGCTTGGTTCACACGACGGAGAGGA
                      ____________________________________________________________
consensus GCACTCTGGCGGGCACCACTTGTTATGAGGTAGATTGCTTGGTTCACACGACGGAGAGGA
 
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rJMFF013B24- GAAATATCAACAGCCTGACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
rJMSF002J17- GAAATATCAACAGCCTGACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
JMFF026K18+ GACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
JMFF011I05+ GAAATATCAACAGCCTGACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
                      ____________________________________________________________
consensus GAAATATCAACAGCCTGACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
 
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rJMFF013B24- CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
rJMSF002J17- CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
JMFF026K18+ CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
JMFF011I05+ CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
JMFF013B24+ GGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
                      ____________________________________________________________
consensus CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
 
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rJMFF013B24- AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
rJMSF002J17- AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
JMFF026K18+ AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
JMFF011I05+ AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
JMFF013B24+ AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
                      ____________________________________________________________
consensus AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
 
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rJMFF013B24- TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
rJMSF002J17- TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
JMFF026K18+ TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
JMFF011I05+ TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
JMSF002J17+ CCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
JMFF013B24+ TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
                      ____________________________________________________________
consensus TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
 
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rJMFF013B24- CTGAACCTTTTGGCTTGGTACCGACCTGCAGTG
rJMSF002J17- CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
JMFF026K18+ CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
JMFF011I05+ CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
JMSF002J17+ CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
JMFF013B24+ CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
                      ____________________________________________________________
consensus CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
 
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rJMSF002J17- GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
JMFF026K18+ GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
JMFF011I05+ GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
JMSF002J17+ GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
JMFF013B24+ GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
                      ____________________________________________________________
consensus GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
 
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rJMSF002J17- CAACGGTTGAAG
JMFF026K18+ CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
JMFF011I05+ CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
JMSF002J17+ CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
JMFF013B08+ CTTTGA
JMFF013B24+ CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
                      ____________________________________________________________
consensus CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
 
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JMFF026K18+ GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
JMFF011I05+ GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
JMSF002J17+ GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
JMFF013B08+ GCCTTCTCCTCTTGCGGANTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
JMFF013B24+ GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
                      ____________________________________________________________
consensus GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
 
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JMFF026K18+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACG
JMFF011I05+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACG
JMSF002J17+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACG
JMFF013B08+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACG
JMFF013B24+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACGCAG
                      ____________________________________________________________
consensus CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACGCAG