Contig 004491:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010N18Sequence542004491 (9)ref|NP_001234287.1|2e-41vacuolar H+-ATPase A2 subunit isoform [Solanum lycopersicum] gb|AAO23981.1| vacu773002539 (6)dbj|BAH20314.1|9e-67AT1G78900 [Arabidopsis thaliana]
JMFF017K12Sequence578004491 (9)gb|EYU21201.1|1e-74hypothetical protein MIMGU_mgv1a002947mg [Erythranthe guttata]649002539 (6)ref|XP_006362109.1|2e-47PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]
JMFF018K21Sequence556004491 (9)gb|EYU21201.1|1e-69hypothetical protein MIMGU_mgv1a002947mg [Erythranthe guttata]757002539 (6)ref|XP_006362109.1|4e-75PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]
JMFF040C17Sequence498004491 (9)ref|NP_001234287.1|1e-52vacuolar H+-ATPase A2 subunit isoform [Solanum lycopersicum] gb|AAO23981.1| vacu679002539 (6)ref|NP_001234281.1|2e-48vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu
JMFS052H06Sequence626004491 (9)ref|XP_011072769.1|6e-97PREDICTED: V-type proton ATPase catalytic subunit A [Sesamum indicum] ref|XP_01
JMFS119G04Sequence626004491 (9)ref|XP_009608462.1|1e-90PREDICTED: V-type proton ATPase catalytic subunit A-like [Nicotiana tomentosifo
JMSF004E23Sequence349004491 (9)gb|KDO46834.1|6e-71hypothetical protein CISIN_1g010179mg [Citrus sinensis]
JMSF027B02Sequence621004491 (9)ref|XP_009608462.1|1e-77PREDICTED: V-type proton ATPase catalytic subunit A-like [Nicotiana tomentosifo731002539 (6)dbj|BAH20314.1|4e-62AT1G78900 [Arabidopsis thaliana]
JMSF050E13Sequence682004491 (9)gb|KDO46834.1|5e-100hypothetical protein CISIN_1g010179mg [Citrus sinensis]791002539 (6)ref|XP_006362109.1|1e-75PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF050E13+                                                               TCTGGAGG
                      ____________________________________________________________
consensus                                                                 TCTGGAGG
 
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JMFS052H06+                CAACATGGTGTTGCATTAAACTGTTTTCAATGACAGTCGCATAGAGGTCCCCACC
JMFS119G04+                                          TCAATGACAGTCGCATAGAGGTCCCCACC
JMSF050E13+           AAGTGCAACATGGTGTTGCATTAAACTGTTTTCAATGACAGTCGCATAGAGGTCCCCACC
                      ____________________________________________________________
consensus             AAGTGCAACATGGTGTTGCATTAAACTGTTTTCAATGACAGTCGCATAGAGGTCCCCACC
 
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JMFF017K12+                                             TGAAATTCCCAAAGAATGTCTTTGTC
JMFF018K21+                                                                   TGTC
JMSF004E23+                        CCCTCACCTATTTTCTTAGGCTGAAATTCCCAAAGTATGTCTTTGTC
JMFS052H06+           TGTCAAGAGGTCTCCCTCACCTATTTTCTTAGGCTGAAATTCCCAAAGAATGTCTTTGTC
JMFS119G04+           TGTCAAGAGGTCTCCCTCACCTATTTTCTTAGGCTGAAATTCCCAAAGAATGTCTTTGTC
JMSF050E13+           TGTCAAGAGGTCTCCCTCACCTATTTTCTTAGGCTGAAATTCCCAAAGAATGTCTTTGTC
JMSF027B02+                                      CTTAGGCTGAAATTCCCAAAGAATGTCTTTGTC
                      ____________________________________________________________
consensus             TGTCAAGAGGTCTCCCTCACCTATTTTCTTAGGCTGAAATTCCCAAAGAATGTCTTTGTC
 
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JMFF017K12+           AAGGGCTGGAACAGATACACCACGGGGAATGTAGACATCACCAGATTTTATAGCAATTGT
JMFF018K21+           AAGGGCTGGAACAGATACACCACGGGGAATGTAGACATCACCAGATTTTATAGCAATTGT
JMSF004E23+           AAGTGCCGGAACAGATACACCACGGGGAATATAAACATCACCAGACTTTATTGCAATTGT
JMFS052H06+           AAGGGCTGGAACAGATACACCACGGGGAATGTAGACATCACCAGATTTTATAGCAATTGT
JMFS119G04+           AAGGGCTGGAACAGATACACCACGGGGAATGTAGACATCACCAGATTTTATAGCAATTGT
JMSF050E13+           AAGGGCTGGAACAGATACACCACGGGGAATGTAGACATCACCAGATTTTATAGCAATTGT
JMSF027B02+           AAGGGCTGGAACAGATACACCACGGGGAATGTAGACATCACCAGATTTTATAGCAATTGT
                      ____________________________________________________________
consensus             AAGGGCTGGAACAGATACACCACGGGGAATGTAGACATCACCAGATTTTATAGCAATTGT
 
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JMFF017K12+           CTTCAATGGCCTCTGAATACCATCAAATATGTTCCCCAATATTCCAGGACCAAGCTCCAC
JMFF018K21+           CTTCAATGGCCTCTGAATACCATCAAATATGTTCCCCAATATTCCAGGACCAAGCTCCAC
JMSF004E23+           CTTCAACGGTCTCTGAATGCCATCAAAGATGTTCCCCAAAATACCAGGGCCCAGCTCCAC
JMFS052H06+           CTTCAATGGCCTCTGAATACCATCAAATATGTTCCCCAATATTCCAGGACCAAGCTCCAC
JMFS119G04+           CTTCAATGGCCTCTGAATACCATCAAATATGTTCCCCAATATTCCAGGACCAAGCTCCAC
JMSF050E13+           CTTCAATGGCCTCTGAATACCATCAAATATGTTCCCCAATATTCCAGGACCAAGCTCCAC
JMFF040C17+                    CCTCTGAATACCATCAAATATGTTCCCCAATATTCCAGGACCAAGCTCCAC
JMSF027B02+           CTTCAATGGCCTCTGAATACCATCAAATATGTTCCCCAATATTCCAGGACCAAGCTCCAC
JMFF010N18+                                                                     AC
                      ____________________________________________________________
consensus             CTTCAATGGCCTCTGAATACCATCAAATATGTTCCCCAATATTCCAGGACCAAGCTCCAC
 
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JMFF017K12+           TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTANCCATCAGGCCAGCTGTTTCTTC
JMFF018K21+           TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTAACCATCAGGCCAGCTGTTTCTTC
JMSF004E23+           TGACAAAGGCTTGCGTGTACGTAGAACAGGATCATTAACCATCAGCCCAGCTGTTTCTTC
JMFS052H06+           TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTAACCATCAGGCCAGCTGTTTCTTC
JMFS119G04+           TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTAACCATCAGGCCAGCTGTTTCTTC
JMSF050E13+           TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTAACCATCAGGCCAGCTGTTTCTTC
JMFF040C17+           TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTAACCATCAGGCCAGCTGTTTCTTC
JMSF027B02+           TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTAACCATCAGGCCAGCTGTTTCTTC
JMFF010N18+           TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTAACCATCAGGCCAGCTGTTTCTTC
                      ____________________________________________________________
consensus             TGACAAAGGCTTACGAGTACGAAGAACAGGATCATTAACCATCAGGCCAGCTGTTTCTTC
 
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JMFF017K12+           ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
JMFF018K21+           ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
JMSF004E23+           ATAGACCTGAATTGTAGCTGAATCCCCTTCCAATCGAATGATTTCACCAATGAGATTGTC
JMFS052H06+           ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
JMFS119G04+           ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
JMSF050E13+           ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
JMFF040C17+           ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
JMSF027B02+           ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
JMFF010N18+           ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
                      ____________________________________________________________
consensus             ATAAACCTGAATTGTAGCGGAATCTCCTTCCAGCCGAATGATCTCCCCGATAAGGTTGTC
 
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JMFF017K12+           ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
JMFF018K21+           ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
JMSF004E23+           ATGTCCGACACGGACAAGTTCATACATGGCAGCACCAGCCATTCCATCA           
JMFS052H06+           ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
JMFS119G04+           ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
JMSF050E13+           ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
JMFF040C17+           ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
JMSF027B02+           ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
JMFF010N18+           ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
                      ____________________________________________________________
consensus             ATGTCCAACACGAACCAATTCATACATGGCAGCCCCGGCCATTCCATCGGCAACAACAAC
 
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JMFF017K12+           TGGACCAGATACCTTGCGGACGTATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
JMFF018K21+           TGGACCAGATACCTTGCGGACGTATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
JMFS052H06+           TGGACCAGATACCTTGCGGACGTATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
JMFS119G04+           TGGACCAGATACCTTGCGGACGTATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
JMSF050E13+           TGGACCAGATACCTTGCGGACGTATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
JMFF040C17+           TGGACCAGATACCTTGCGGACGCATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
JMSF027B02+           TGGACCAGATACCTTGCGGACGTATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
JMFF010N18+           TGGACCAGATACCTTGCGGACGTATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
                      ____________________________________________________________
consensus             TGGACCAGATACCTTGCGGACGTATCCGTACTCGCTTTCCTTTTCGGAATCCTCGAAAGT
 
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JMFF017K12+           AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
JMFF018K21+           AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
JMFS052H06+           AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
JMFS119G04+           AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
JMSF050E13+           AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
JMFF040C17+           AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
JMSF027B02+           AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
JMFF010N18+           AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
                      ____________________________________________________________
consensus             AGTCAGCGGACCTCCGAACAACGACGGCATTGTGACGAAAGATAACCGTAATCGAATTGC
 
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JMFF017K12+           TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
JMFF018K21+           TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
JMFS052H06+           TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
JMFS119G04+           TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
JMSF050E13+           TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
JMFF040C17+           TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
JMSF027B02+           TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
JMFF010N18+           TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
                      ____________________________________________________________
consensus             TTAAAGTAAAACCTCACAATTCCGTGATCCGCCGGAAGGAGAAGGCCTGCCGATCAATAT
 
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JMFF017K12+           CCTGATAA                                                    
JMFF018K21+           CCTGATAA                                                    
JMFS052H06+           CCTGATAACTGCGAATTTAGATTTAGATTCA                             
JMFS119G04+           CCTGATAACTGCGAATTTAGATTTAGATTCAGATGGTCGACTGTGTGCGAAGTG      
JMSF050E13+           CCTGATAACTGCGAATTTAGATTTAGATTCAGATGGTCGACTGTGTGCGAAGTGTCAGAG
JMFF040C17+           CCTGATAACTGCGAATTTAGATTTAGATTCAGATGGTCGACTGTGTGCGAAGTGTCAGAG
JMSF027B02+           CCTGATAACTGCGAATTTAGATTTAGATTCAGATGGTCGACTGTGTGCGAAGTGTCAGAG
JMFF010N18+           CCTGATAACTGCGAATTTAGATTTAGATTCAGATGGTCGACTGTGTGCGAAGTGTCAGAG
                      ____________________________________________________________
consensus             CCTGATAACTGCGAATTTAGATTTAGATTCAGATGGTCGACTGTGTGCGAAGTGTCAGAG
 
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JMSF050E13+           AGAGGTTGTAAAT                                               
JMFF040C17+           AGAGGTTGTAAATGATTATATGAAGAC                                 
JMSF027B02+           AGAGGTTGTAAATGATTATATGAAGACGAAGCTGAGCAGTGAGAGAT             
JMFF010N18+           AGAGGTTGTAAATGATTATATGAAGACGAAGCTGAGCAGTGAGAGATATAGCACCTTTTA
                      ____________________________________________________________
consensus             AGAGGTTGTAAATGATTATATGAAGACGAAGCTGAGCAGTGAGAGATATAGCACCTTTTA
 
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JMFF010N18+           ACCGATGTCCTGTCTTGAAGGCACGGATTTGGACATACAAAACAATATCATGGGAAAATC
                      ____________________________________________________________
consensus             ACCGATGTCCTGTCTTGAAGGCACGGATTTGGACATACAAAACAATATCATGGGAAAATC