| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002F06 | Sequence | 586 | 004489 (9) | emb|CDP10212.1| | 5e-40 | unnamed protein product [Coffea canephora] | 723 | 006797 (9) | ref|XP_004242572.1| | 2e-70 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] |
| JMFF005F07 | Sequence | 365 | 004489 (9) | emb|CDP10212.1| | 2e-05 | unnamed protein product [Coffea canephora] | 711 | 006797 (9) | ref|XP_004242572.1| | 2e-69 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] |
| JMFF008D17 | Sequence | 592 | 004489 (9) | emb|CDP10212.1| | 3e-20 | unnamed protein product [Coffea canephora] | 774 | 006797 (9) | ref|XP_004242572.1| | 5e-76 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] |
| JMFF009J05 | Sequence | 592 | 004489 (9) | emb|CDP10212.1| | 3e-20 | unnamed protein product [Coffea canephora] | 749 | 006797 (9) | ref|XP_004242572.1| | 2e-71 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] |
| JMFF010L01 | Sequence | 592 | 004489 (9) | emb|CDP10212.1| | 3e-20 | unnamed protein product [Coffea canephora] | 675 | 006797 (9) | ref|XP_004242572.1| | 6e-58 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] |
| JMFF018F24 | Sequence | 595 | 004489 (9) | emb|CDP10212.1| | 8e-27 | unnamed protein product [Coffea canephora] | 790 | 006797 (9) | ref|XP_004242572.1| | 1e-77 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] |
| JMSF010H07 | Sequence | 409 | 004489 (9) | emb|CDP10212.1| | 1e-09 | unnamed protein product [Coffea canephora] | 748 | 006797 (9) | ref|XP_004242572.1| | 3e-76 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] |
| JMSF021L21 | Sequence | 698 | 004489 (9) | ref|XP_004242572.1| | 4e-65 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] | 756 | 006797 (9) | ref|XP_004242572.1| | 1e-77 | PREDICTED: protein RTF2 homolog [Solanum lycopersicum] |
| JMSF025L14 | Sequence | 667 | 004489 (9) | emb|CDP10212.1| | 9e-41 | unnamed protein product [Coffea canephora] | 649 | 006797 (9) | ref|XP_009775838.1| | 2e-51 | PREDICTED: protein RTF2 homolog [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF021L21+ CTCAATTGGAATCATATCT
____________________________________________________________
consensus CTCAATTGGAATCATATCT
. : . : . : . : . : . :
JMSF021L21+ CTCAACCCCTTTATGTAAGCAAACTGTTTAGGCACTTGTTTCTTCAACAAGGCTTCGACC
____________________________________________________________
consensus CTCAACCCCTTTATGTAAGCAAACTGTTTAGGCACTTGTTTCTTCAACAAGGCTTCGACC
. : . : . : . : . : . :
JMSF021L21+ AAGGCCTCCTTGTTAAACAAATTCCCAAGCTTATCGATCACCACGGGATGCTTCAAAGGC
JMFF002F06+ TCACCACGGGATGCTTCAAAGGC
JMSF025L14+ TCACCACGGGATGCTTCAAAGGC
____________________________________________________________
consensus AAGGCCTCCTTGTTAAACAAATTCCCAAGCTTATCGATCACCACGGGATGCTTCAAAGGC
. : . : . : . : . : . :
JMSF021L21+ TCATTTGACAATGTACAATTCAACCACTTGGACAACCTAACCTCATTAGGGTCAATTTTG
JMFF018F24+ AACCTCATTAGGGTCAATTTTG
JMFF002F06+ TCATTTGACAATGTACAATTCAACCACTTGGACAACCTAACCTCATTAGGGTCAATTTTG
JMSF025L14+ TCATTTGACAATGTACAATTCAACCACTTGGACAACCTAACCTCATTAGGGTCAATTTTG
____________________________________________________________
consensus TCATTTGACAATGTACAATTCAACCACTTGGACAACCTAACCTCATTAGGGTCAATTTTG
. : . : . : . : . : . :
JMSF021L21+ TCAGGCTTCTTCTCAGCATACATCTTAAGATAACAGTCACGGGACTCGGCCCCAGTGGCA
JMFF018F24+ TCAGGCTTCTTCTCAGCATACATCTTAAGATAACAGTCACGGGACTCGGCCCCAGTGGCA
JMFF002F06+ TCAGGCTTCTTCTCAGCATACATCTTAAGATAACAGTCACGGGACTCGGCCCCAGTGGCA
JMSF025L14+ TCAGGCTTCTTCTCAGCATACATCTTAAGATAACAGTCACGGGACTCGGCCCCAGTGGCA
JMFF009J05+ CTTCTCAGCATACATCTTAAGATAACAGTCACGGGACTCGGCCCCAGTGGCA
JMFF008D17+ CTTCTCAGCATACATCTTAAGATAACAGTCACGGGACTCGGCCCCAGTGGCA
JMFF010L01+ CTTCTCAGCATACATCTTAAGATAACAGTCACGGGACTCGGCCCCAGTGGCA
____________________________________________________________
consensus TCAGGCTTCTTCTCAGCATACATCTTAAGATAACAGTCACGGGACTCGGCCCCAGTGGCA
. : . : . : . : . : . :
JMSF021L21+ CCGCCATCGCCACCTCCACCAAGGAAGCGGAGGCGCAGGGTCAAGGTGGAGAGAGGGGCA
JMFF018F24+ CCGCCATCGCCACCTCCACCAAGGAAGCGGAGGCGCAGGGTCAAGGTGGAGAGAGGGGCA
JMFF002F06+ CCGCCATCGCCACCTCCACCAAGGAAGCGGAGGCGCAGGGTCAAGGTGGAGAGAGGGGCA
JMSF025L14+ CCGCCATCGCCACCTCCACCAAGGAAGCGGAGGCGCAGGGTCAAGGTGGAGAGAGGGGCA
JMFF009J05+ CCGCCATCGCCACCTCCACCAAGGAAGCGGAGGCGCAGGGTCAAGGTGGAGAGAGGGGCA
JMFF008D17+ CCGCCATCGCCACCTCCACCAAGGAAGCGGAGGCGCAGGGTCAAGGTGGAGAGAGGGGCA
JMFF010L01+ CCGCCATCGCCACNTCCACCAAGGAAGCGGAGGCGCAGGGTCAAGGTGGAGAGAGGGGCA
____________________________________________________________
consensus CCGCCATCGCCACCTCCACCAAGGAAGCGGAGGCGCAGGGTCAAGGTGGAGAGAGGGGCA
. : . : . : . : . : . :
JMSF021L21+ ATAAGGGAACTGTTTACAGGAGTAGAATCTGGGATTAATTTCCCATCCAAGGTGAAATAG
JMFF018F24+ ATAAGGGAACTGTTTACAGGAGTAGAATCTGGGATTAATTTCCCATCCAAGGTGAAATAG
JMFF002F06+ ATAAGGGAACTGTTTACAGGAGTAGAATCTGGGATTAATTTCCCATCCAAGGTGAAATAG
JMSF010H07+ TCCAAGGTGAAATAG
JMSF025L14+ ATAAGGGAACTGTTTACAGGAGTAGAATCTGGGATTAATTTCCCATCCAAGGTGAAATAG
JMFF009J05+ ATAAGGGAACTGTTTACAGGAGTAGAATCTGGGATTAATTTCCCATCCAAGGTGAAATAG
JMFF008D17+ ATAAGGGAACTGTTTACAGGAGTAGAATCTGGGATTAATTTCCCATCCAAGGTGAAATAG
JMFF010L01+ ATAAGGGAACTGTTTACAGGAGTAGAATCTGGGATTAATTTCCCATCCAAGGTGAAATAG
____________________________________________________________
consensus ATAAGGGAACTGTTTACAGGAGTAGAATCTGGGATTAATTTCCCATCCAAGGTGAAATAG
. : . : . : . : . : . :
JMSF021L21+ CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
JMFF018F24+ CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
JMFF002F06+ CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
JMSF010H07+ CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
JMSF025L14+ CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
JMFF009J05+ CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
JMFF008D17+ CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
JMFF005F07+ TAATG
JMFF010L01+ CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
____________________________________________________________
consensus CCAGAGTGCTGAATTAGGGTTAGGGTTTTGGAAAAGATGAATGCTTTGAGGTCTTTAATG
. : . : . : . : . : . :
JMSF021L21+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
JMFF018F24+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
JMFF002F06+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
JMSF010H07+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
JMSF025L14+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
JMFF009J05+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
JMFF008D17+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
JMFF005F07+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
JMFF010L01+ GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
____________________________________________________________
consensus GTGAAACCTGGGTTTGGGGATTCAAGACTTATGGCTCGGGTTGGGATTTTGAGGTCTGGG
. : . : . : . : . : . :
JMSF021L21+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
JMFF018F24+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
JMFF002F06+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCACTCTCTGATTTCCTTAGCTT
JMSF010H07+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
JMSF025L14+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
JMFF009J05+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
JMFF008D17+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
JMFF005F07+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
JMFF010L01+ GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
____________________________________________________________
consensus GATTGAATGAAAATCTGAAAATTCTGGCTTTTCGAATCCATTCTCTGATTTCCTTAGCTT
. : . : . : . : . : . :
JMSF021L21+ TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGAAAAAGTATCGAGATTGAACAG
JMFF018F24+ TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGAAAAAGTATCGAGATTGAACAG
JMFF002F06+ TTCGCGATTGGTTCGGTTTCACAGTTCATGCACAATTGAAAAAGTATCGAGATTGAACAG
JMSF010H07+ TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGAAAAAGTATCGAGATTGAACAG
JMSF025L14+ TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGAAAAAGTATCGAGATTGAACAG
JMFF009J05+ TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGGAAAAGTATCGAGATTGAACAG
JMFF008D17+ TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGGAAAAGTATCGAGATTGAACAG
JMFF005F07+ TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGGAAAAGTATCGAGATTGAACAG
JMFF010L01+ TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGGAAAAGTATCGAGATTGAACAG
____________________________________________________________
consensus TTCGCGATTGGTTCGGTTTCACAGTTTATGCACAATTGAAAAAGTATCGAGATTGAACAG
. : . : . : . : . : . :
JMSF021L21+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
JMFF018F24+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
JMFF002F06+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
JMSF010H07+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
JMSF025L14+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
JMFF009J05+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
JMFF008D17+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
JMFF005F07+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
JMFF010L01+ GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
____________________________________________________________
consensus GTGGAATCAACAGAAGATTTACCTGGAAGAAGAGAAATTGAAGTGAAGATCAGAAGATCT
. : . : . : . : . : . :
JMSF021L21+ TTGCTTTTCCCAGAAATC
JMFF018F24+ TTGCTTTTCCCAGAAATCAATTCAACAGGAGACGGGGAACATGTATGTATATAAACAAGG
JMFF002F06+ TTGCTTTTCCCAGAAATCA
JMSF010H07+ TTGCTTTTCCCAGAAATCAATTCAACAGGAGACGGGGAACATGTATGTATATAAACAAGG
JMSF025L14+ TTGCTTTTCCCAGAAATCAATTCAACAGGAGACGGGGAACATGTATGTATATAAACAAGG
JMFF009J05+ TTGCTTTTCCCAGAAATCAATTCAACAGGAGACGGGGAACATGTATGTATATAAACAAGG
JMFF008D17+ TTGCTTTTCCCAGAAATCAATTCAACAGGAGACGGGGAACATGTATGTATATAAACAAGG
JMFF005F07+ TTGCTTTTCCCAGAAATCAATTCAACAGGAGACGGGGAACATGTATGTATATAAACAAGG
JMFF010L01+ TTGCTTTTCCCAGAAATCAATTCAACAGGAGACGGGGAACATGTATGTATATAAACAAGG
____________________________________________________________
consensus TTGCTTTTCCCAGAAATCAATTCAACAGGAGACGGGGAACATGTATGTATATAAACAAGG
. : . : . : . : . : . :
JMFF018F24+ TTTGATCGCAACTCCGTGCACCGACGTTCAGAT
JMSF010H07+ TTTGATCGCAACTCCGTGCACCGACGTTCAGAT
JMSF025L14+ TTTGATCGCAACTCCGTGCACCGACGTTCAGATAAATAGAT
JMFF009J05+ TTTGATCGCAACTCCGTGCACCGACGTTCAGATAAATAGATGAATAGTCAGAAATCGAAT
JMFF008D17+ TTTGATCGCAACTCCGTGCACCGACGTTCAGATAAATAGATGAATAGTCAGAAATCGAAT
JMFF005F07+ TTTGATCGCAACTCCGTGCACCGACGTTCAGATAAATAGATGAATAGTCAGAAATCGAAT
JMFF010L01+ TTTGATCGCAACTCCGTGCACCGACGTTCAGATAAATAGATGAATAGTCAGAAATCGAAT
____________________________________________________________
consensus TTTGATCGCAACTCCGTGCACCGACGTTCAGATAAATAGATGAATAGTCAGAAATCGAAT