clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF002G09 | Sequence | 516 | 004475 (4) | ref|XP_009594017.1| | 5e-12 | PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis] | 760 | 011331 (5) | ref|XP_011017101.1| | 7e-117 | PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica] |
JMFF008C17 | Sequence | 515 | 004475 (4) | ref|XP_009594017.1| | 8e-11 | PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis] | 761 | 011331 (5) | ref|XP_011017101.1| | 8e-138 | PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica] |
JMFF040B19 | Sequence | 437 | 004475 (4) | ref|XP_009594017.1| | 1e-17 | PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis] | 190 | 011331 (5) | ref|XP_011016941.1| | 8e-08 | PREDICTED: probable protein phosphatase 2C 38 isoform X2 [Populus euphratica] |
JMSF025I04 | Sequence | 647 | 004475 (4) | ref|XP_009594017.1| | 2e-37 | PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis] | 788 | 011331 (5) | ref|XP_011017101.1| | 6e-143 | PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica] |
This contig is upended
. : . : . : . : . : . :
JMSF025I04+ AACAAACGTGCTGAGGACCCGTNTCAACCGAGCTCAATGACCCTGATTC
____________________________________________________________
consensus AACAAACGTGCTGAGGACCCGTNTCAACCGAGCTCAATGACCCTGATTC
. : . : . : . : . : . :
JMSF025I04+ GAGCTGGCACTGATCCTCCAGTACATTATTTGCTTGAATTACAGCCATTGAGAATTCCCC
____________________________________________________________
consensus GAGCTGGCACTGATCCTCCAGTACATTATTTGCTTGAATTACAGCCATTGAGAATTCCCC
. : . : . : . : . : . :
JMFF040B19+ ATTGACATGATGCCCTAAATCTTTATACCACAACAACCCATCCACCCGGCCATTCGGGTC
JMSF025I04+ ATTGACATGATGCCCTAAATCTTTATACCACAACAACCCATCCACCCGGCCATTCGGGTC
JMFF002G09+ TACCACAACAACCCATCCACCCGGCCATTCGGGTC
JMFF008C17+ TACCACAACAACCCATCCACCCGGCCATTCGGGTC
____________________________________________________________
consensus ATTGACATGATGCCCTAAATCTTTATACCACAACAACCCATCCACCCGGCCATTCGGGTC
. : . : . : . : . : . :
JMFF040B19+ TCCCCCTCTACTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
JMSF025I04+ TCCCCCTCTACTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
JMFF002G09+ TCCCCCTCTACTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
JMFF008C17+ TCCCCCTCTNCTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
____________________________________________________________
consensus TCCCCCTCTACTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
. : . : . : . : . : . :
JMFF040B19+ TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
JMSF025I04+ TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
JMFF002G09+ TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
JMFF008C17+ TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
____________________________________________________________
consensus TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
. : . : . : . : . : . :
JMFF040B19+ AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
JMSF025I04+ AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
JMFF002G09+ AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
JMFF008C17+ AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
____________________________________________________________
consensus AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
. : . : . : . : . : . :
JMFF040B19+ CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
JMSF025I04+ CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
JMFF002G09+ CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
JMFF008C17+ CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
____________________________________________________________
consensus CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
. : . : . : . : . : . :
JMFF040B19+ GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
JMSF025I04+ GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
JMFF002G09+ GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
JMFF008C17+ GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
____________________________________________________________
consensus GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
. : . : . : . : . : . :
JMFF040B19+ CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
JMSF025I04+ CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
JMFF002G09+ CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
JMFF008C17+ CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
____________________________________________________________
consensus CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
. : . : . : . : . : . :
JMFF040B19+ AACAATTGTTTTAGAAT
JMSF025I04+ AACAATTGTTTTAGAATGAGGAAAGCAGAGGAGGGTGGGCGGGGTGGAGGAGGAGTTGTT
JMFF002G09+ AACAATTGTTTTAGAATGAGGAAAGCAGAGGAGGGTGGGCGGGGTGGAGGAGGAGTTGTT
JMFF008C17+ AACAATTGTTTTAGAATGAGGAAAGCAGAGGAGGGTGGGCGGGGTGGAGGAGGAGTTGTT
____________________________________________________________
consensus AACAATTGTTTTAGAATGAGGAAAGCAGAGGAGGGTGGGCGGGGTGGAGGAGGAGTTGTT
. : . : . : . : . : . :
JMSF025I04+ TTTTCCCTTTTTTATTTTTTTTTGGGTTTTTTCTTTATTGTAAAAAGAAAGAGAGAC
JMFF002G09+ TTTTCCCTTTTTTATTTTTTTTTGGGTTTTTTCTTTATTGTAAAAAGAAAGAGAGAC
JMFF008C17+ TTTTCCCTTTTTTATTTTTTTTTGGGTTTTTTCTTTATTGTAAAAAGAAAGAGAGACGGC
____________________________________________________________
consensus TTTTCCCTTTTTTATTTTTTTTTGGGTTTTTTCTTTATTGTAAAAAGAAAGAGAGACGGC