Contig 004461:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005J24Sequence261004461 (5)719006788 (3)ref|XP_009602497.1|5e-89PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform
JMFS030F09Sequence474004461 (5)ref|XP_009602497.1|6e-24PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform
JMFS058D06Sequence597004461 (5)ref|XP_009602497.1|8e-38PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform
JMSF011P05Sequence223004461 (5)654006788 (3)ref|XP_009795730.1|4e-98PREDICTED: leucine-rich repeat extensin-like protein 4 [Nicotiana sylvestris]
JMSF049K05Sequence223004461 (5)716006788 (3)ref|XP_009602497.1|4e-89PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS058D06+ AACTCAGTGAGGGAA
                      ____________________________________________________________
consensus AACTCAGTGAGGGAA
 
. : . : . : . : . : . :
JMFS058D06+ ACAAGGTCTCTAAAGGTTTCTGGGATTGTGCCTGAAAATCTGTTGGTGTTGAGGTGGAGG
                      ____________________________________________________________
consensus ACAAGGTCTCTAAAGGTTTCTGGGATTGTGCCTGAAAATCTGTTGGTGTTGAGGTGGAGG
 
. : . : . : . : . : . :
JMFS030F09+ AGATTTGCATGG
JMFS058D06+ AGGGAGAGGTCTGTTAACAAAGAAAGCTCTTTTACAAGAACCCCTTTGAGATTTGCATGG
                      ____________________________________________________________
consensus AGGGAGAGGTCTGTTAACAAAGAAAGCTCTTTTACAAGAACCCCTTTGAGATTTGCATGG
 
. : . : . : . : . : . :
JMFS030F09+ TTTAGATCTATACCTGCCACAACTTCATCTGGGTTGCCCATAAAATCTTGAGAGTCTGAG
JMFS058D06+ TTTAGATCTATACCTGCCACAACTTCATCTGGGTTGCCCATAAAATCTTGAGAGTCTGAG
                      ____________________________________________________________
consensus TTTAGATCTATACCTGCCACAACTTCATCTGGGTTGCCCATAAAATCTTGAGAGTCTGAG
 
. : . : . : . : . : . :
JMFS030F09+ CAGAAAACCCCTTTGTAATCACACACATTTGACCCAACCCATGACTTCAAAATCCCCAAT
JMFS058D06+ CAGAAAACCCCTTTGTAATCACACACATTTGACCCAACCCATGACTTCAAAATCCCCAAT
                      ____________________________________________________________
consensus CAGAAAACCCCTTTGTAATCACACACATTTGACCCAACCCATGACTTCAAAATCCCCAAT
 
. : . : . : . : . : . :
JMFS030F09+ GGGTCCTCAGAAACTGCAGATTTCAATGCTTGCAGAGCAGTGTATCCTTTTTGAAGCTTT
JMFS058D06+ GGGTCCTCAGAAACTGCAGATTTCAATGCTTGCAGAGCAGTGTATCCTTTTTGAAGCTTT
                      ____________________________________________________________
consensus GGGTCCTCAGAAACTGCAGATTTCAATGCTTGCAGAGCAGTGTATCCTTTTTGAAGCTTT
 
. : . : . : . : . : . :
JMFS030F09+ GAGCCACCACCAGAAGAGCCTGTTGGCCCTGGACTGTTGATTCCTCCACCAATCCAAACC
JMSF049K05+ CAAACC
JMSF011P05+ CAAACC
JMFS058D06+ GAGCCACCACCAGAAGAGCCTGTTGGCCCTGGACTGTTGATTCCTCCACCAATCCAAACC
JMFF005J24+ ATTCCTCCACCAATCCAAACC
                      ____________________________________________________________
consensus GAGCCACCACCAGAAGAGCCTGTTGGCCCTGGACTGTTGATTCCTCCACCAATCCAAACC
 
. : . : . : . : . : . :
JMFS030F09+ CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
JMSF049K05+ CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
JMSF011P05+ CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
JMFS058D06+ CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
JMFF005J24+ CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
                      ____________________________________________________________
consensus CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
 
. : . : . : . : . : . :
JMFS030F09+ CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
JMSF049K05+ CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
JMSF011P05+ CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
JMFS058D06+ CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
JMFF005J24+ CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
                      ____________________________________________________________
consensus CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
 
. : . : . : . : . : . :
JMFS030F09+ AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
JMSF049K05+ AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
JMSF011P05+ AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
JMFS058D06+ AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
JMFF005J24+ AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
                      ____________________________________________________________
consensus AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
 
. : . : . : . : . : . :
JMFS030F09+ TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGC
JMSF049K05+ TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGC
JMSF011P05+ TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGC
JMFS058D06+ TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGC
JMFF005J24+ TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGCATTGATGATGGAGGAAGTGTAAAT
                      ____________________________________________________________
consensus TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGCATTGATGATGGAGGAAGTGTAAAT