Contig 004453:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003P20Sequence181004453 (6)601004453 (6)ref|XP_006363468.1|2e-55PREDICTED: probable histone H2AXb-like [Solanum tuberosum]
JMFF010F19Sequence564004453 (6)ref|XP_006363468.1|1e-55PREDICTED: probable histone H2AXb-like [Solanum tuberosum]
JMFN025D22Sequence508004453 (6)ref|XP_004148883.1|7e-56PREDICTED: histone H2AX-like [Cucumis sativus] ref|XP_004171385.1| PREDICTED: hi
JMSF043A22Sequence797004453 (6)ref|XP_006363468.1|1e-54PREDICTED: probable histone H2AXb-like [Solanum tuberosum]676004453 (6)ref|XP_006363468.1|1e-56PREDICTED: probable histone H2AXb-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF043A22- AGAGTTCATTTACAAAGAACAGTCACTCATTCATCATGCCCACAGCA
JMSF043A22+ TCATCATGCCCACAGCA
                      ____________________________________________________________
consensus AGAGTTCATTTACAAAGAACAGTCACTCATTCATCATGCCCACAGCA
 
. : . : . : . : . : . :
rJMSF043A22- CTGCAATTTGACAGTATCTTGCATATGCATCACAGCATTCTCAGACTTGGGTAAACACAT
JMSF043A22+ NTGCAATTTGACAGTATCTTGCATATGCATCACAGCATTCTCAGACTTGGGTAAACACAT
                      ____________________________________________________________
consensus CTGCAATTTGACAGTATCTTGCATATGCATCACAGCATTCTCAGACTTGGGTAAACACAT
 
. : . : . : . : . : . :
rJMSF043A22- CAAATCTCAAGCAATGCCAATAAACCCCAAAACAAATGTGCTTGAACCATGATTTGAATT
JMSF043A22+ CAAATNTCAAGCAATGCCAATAAACCCCAAAACAAATGTGCTTGAACCATGATTTGAATT
                      ____________________________________________________________
consensus CAAATCTCAAGCAATGCCAATAAACCCCAAAACAAATGTGCTTGAACCATGATTTGAATT
 
. : . : . : . : . : . :
rJMSF043A22- AACCCAATGAATTTGAAATCAAAACCTCAAACAGCAGCATATTGAACCAAAACAGCAATT
JMFN025D22+ T
JMSF043A22+ AACCCAATGAATTTGAAATCAAAACCTCAAACAGCAGCATATTGAACCAAAACAGCAATT
rJMFF003P20- T
                      ____________________________________________________________
consensus AACCCAATGAATTTGAAATCAAAACCTCAAACAGCAGCATATTGAACCAAAACAGCAATT
 
. : . : . : . : . : . :
rJMSF043A22- GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
JMFN025D22+ GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
JMSF043A22+ GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
rJMFF003P20- GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
JMFF010F19+ CCCGAGTACAAAAACAGCTATTTT
                      ____________________________________________________________
consensus GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
 
. : . : . : . : . : . :
rJMSF043A22- ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
JMFN025D22+ ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
JMSF043A22+ ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
rJMFF003P20- ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
JMFF010F19+ ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
                      ____________________________________________________________
consensus ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
 
. : . : . : . : . : . :
rJMSF043A22- CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
JMFN025D22+ CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
JMSF043A22+ CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
rJMFF003P20- CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
JMFF010F19+ CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
                      ____________________________________________________________
consensus CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
 
. : . : . : . : . : . :
rJMSF043A22- ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
JMFN025D22+ ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
JMSF043A22+ ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
rJMFF003P20- ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
JMFF010F19+ ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
                      ____________________________________________________________
consensus ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
 
. : . : . : . : . : . :
rJMSF043A22- TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
JMFN025D22+ TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
JMSF043A22+ TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
rJMFF003P20- TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
JMFF010F19+ TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
                      ____________________________________________________________
consensus TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
 
. : . : . : . : . : . :
rJMSF043A22- TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
JMFN025D22+ TCCCTGGTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
JMSF043A22+ TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
rJMFF003P20- TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
JMFF010F19+ TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
                      ____________________________________________________________
consensus TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
 
. : . : . : . : . : . :
rJMSF043A22- GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
JMFN025D22+ GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
JMSF043A22+ GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
rJMFF003P20- GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
JMFF010F19+ GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
JMFF003P20+ C
                      ____________________________________________________________
consensus GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
 
. : . : . : . : . : . :
rJMSF043A22- CGACGGGGAACTGGAGCCCCGCCTTCGAC
JMFN025D22+ CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
JMSF043A22+ CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
rJMFF003P20- CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
JMFF010F19+ CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
JMFF003P20+ CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
                      ____________________________________________________________
consensus CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
 
. : . : . : . : . : . :
JMFN025D22+ TGCCCCTTCCGGCGCCACCCT
JMSF043A22+ TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
rJMFF003P20- TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
JMFF010F19+ TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
JMFF003P20+ TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
                      ____________________________________________________________
consensus TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
 
. : . : . : . : . : . :
JMSF043A22+ CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAG
rJMFF003P20- CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAG
JMFF010F19+ CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAG
JMFF003P20+ CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAGCGAT
                      ____________________________________________________________
consensus CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAGCGAT