Contig 004438:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001N10Sequence520004438 (4)emb|CDO98827.1|1e-34unnamed protein product [Coffea canephora]759002575 (4)ref|XP_006354280.1|1e-81PREDICTED: P17/29C-like protein DDB_G0287399-like [Solanum tuberosum]
JMFF020L22Sequence533004438 (4)emb|CDO98827.1|2e-37unnamed protein product [Coffea canephora]733002575 (4)ref|XP_009758238.1|6e-77PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Nicotiana sylves
JMFF025M20Sequence551004438 (4)emb|CDO98827.1|3e-40unnamed protein product [Coffea canephora]337002575 (4)ref|XP_011091009.1|1e-17PREDICTED: ATP-dependent RNA helicase glh-2-like [Sesamum indicum]
JMSF044H05Sequence743004438 (4)emb|CDO98827.1|3e-65unnamed protein product [Coffea canephora]826002575 (4)ref|XP_004229269.1|4e-89PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Solanum lycopers

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044H05+ ACCCCC
                      ____________________________________________________________
consensus ACCCCC
 
. : . : . : . : . : . :
JMSF044H05+ AGCCATACTACTCATTGGTGTCCCTCCAAGACCAGAACTTCTATTATTTGGAGCACTCAT
                      ____________________________________________________________
consensus AGCCATACTACTCATTGGTGTCCCTCCAAGACCAGAACTTCTATTATTTGGAGCACTCAT
 
. : . : . : . : . : . :
JMSF044H05+ ATTCACATTGCCACTACTAACATTAGTATTATATCCCCCACTGGTAAAGTTTCCGAAACT
                      ____________________________________________________________
consensus ATTCACATTGCCACTACTAACATTAGTATTATATCCCCCACTGGTAAAGTTTCCGAAACT
 
. : . : . : . : . : . :
JMSF044H05+ CTGGTTAGATCCCCCCCAAGTTCCGCTGCTTTTGACAGAACTACCTGTTTTCGGCAAGGA
                      ____________________________________________________________
consensus CTGGTTAGATCCCCCCCAAGTTCCGCTGCTTTTGACAGAACTACCTGTTTTCGGCAAGGA
 
. : . : . : . : . : . :
JMSF044H05+ ATCGGCCACACCCCCCATTGAAAATGAACTCTTATTTGTCACCGGGGTGGAATTTTTCAG
JMFF025M20+ GAATTTTTCAG
                      ____________________________________________________________
consensus ATCGGCCACACCCCCCATTGAAAATGAACTCTTATTTGTCACCGGGGTGGAATTTTTCAG
 
. : . : . : . : . : . :
JMSF044H05+ TGGCACATTGCTACCACCCTTATTTTGCCGAAGTGCTGAGTTCACCAAATCACCAAACAA
JMFF020L22+ GGCACATTGCTACCACCCTTATTTTGCCGAAGTGCTGAGTTCACCAAATCACCAAACAA
JMFF025M20+ TGGCACATTGCTACCACCCTTATTTTGCCGAAGTGCTGAGTTCACCAAATCACCAAACAA
JMFF001N10+ TATTTTGCCGAAGTGCTGAGTTCACCAAATCACCAAACAA
                      ____________________________________________________________
consensus TGGCACATTGCTACCACCCTTATTTTGCCGAAGTGCTGAGTTCACCAAATCACCAAACAA
 
. : . : . : . : . : . :
JMSF044H05+ ATTAGGGTCTTTTTTCGTCACAATACCTACAGTTGAAGCACTACCAGTGTTCGAGGGCGC
JMFF020L22+ ATTAGGGTCTTTTTTCGTCACAATACCTACAGTTGAAGCACTACCAGTGTTCGAGGGCGC
JMFF025M20+ ATTAGGGTCTTTTTTCGTCACAATACCTACAGTTGAAGCACTACCAGTGTTCGAGGGCGC
JMFF001N10+ ATTAGGGTCTTTTTTCGTCACAATACCTACAGTTGAAGCACTACCAGTGTTCGAGGGCGC
                      ____________________________________________________________
consensus ATTAGGGTCTTTTTTCGTCACAATACCTACAGTTGAAGCACTACCAGTGTTCGAGGGCGC
 
. : . : . : . : . : . :
JMSF044H05+ CGCAGAGCCCCAACTCTTCCCAAATATATCCCCAACCATGGACGTCGGCCCGGACAGAGA
JMFF020L22+ CGCAGAGCCCCAACTCTTCCCAAATATATCCCCAACCATGGACGTCGGCCCGGACAGAGA
JMFF025M20+ CGCAGAGCCCCAACTCTTCCCAAATATATCCCCAACCATGGACGTCGGCCCGGACAGAGA
JMFF001N10+ CGCAGAGCCCCAACTCTTCCCAAATATATCCCCAACCATGGACGTCGGCCCGGACAGAGA
                      ____________________________________________________________
consensus CGCAGAGCCCCAACTCTTCCCAAATATATCCCCAACCATGGACGTCGGCCCGGACAGAGA
 
. : . : . : . : . : . :
JMSF044H05+ TCCAACAGGTTGGTGAGTCCACGATGCCTTGTTAGTGTTGGATTGGTTGGTCCAAGATGC
JMFF020L22+ TCCAACAGGTTGGTGAGTCCACGATGCCTTGTTAGTGTTGGATTGGTTGGTCCAAGATGC
JMFF025M20+ TCCAACAGGTTGGTGAGTCCACGATGCCTTGTTAGTGTTGGATTGGTTGGTCCAAGATGC
JMFF001N10+ TCCAACAGGTTGGTGAGTCCACGATGCCTTGTTAGTGTTGGATTGGTTGGTCCAAGATGC
                      ____________________________________________________________
consensus TCCAACAGGTTGGTGAGTCCACGATGCCTTGTTAGTGTTGGATTGGTTGGTCCAAGATGC
 
. : . : . : . : . : . :
JMSF044H05+ CGTCCCATACGGCTTTGATTGCGCAGAAGATGAATACGACGACGTTTGGTTCTTTTGGTC
JMFF020L22+ CGTCCCATACGGCTTTGATTGCGCAGAAGATGAATACGACGACGTTTGGTTCTTTTGGTC
JMFF025M20+ CGTCCCATACGGCTTTGATTGCGCAGAAGATGAATACGACGACGTTTGGTTCTTTTGGTC
JMFF001N10+ CGTCCCATACGGCTTTGATTGCGCAGAAGATGAATACGACGACGTTTGGTTCTTTTGGTC
                      ____________________________________________________________
consensus CGTCCCATACGGCTTTGATTGCGCAGAAGATGAATACGACGACGTTTGGTTCTTTTGGTC
 
. : . : . : . : . : . :
JMSF044H05+ ATTGAGAGATCGGGAACAGCCAGTGTTCAGCCCGAAATCGAAATCGTTCATAGAACCCGA
JMFF020L22+ ATTGAGAGATCGGGAACAGCCAGTGTTCAGCCCGAAATCGAAATCGTTCATAGAACCCGA
JMFF025M20+ ATTGAGAGATCGGGAACAGCCAGTGTTCAGCCCGAAATCGAAATCGTTCATAGAACCCGA
JMFF001N10+ ATTGAGAGATCGGGAACAGCCAGTGTTCAGCCCGAAATCGAAATCGTTCATAGAACCCGA
                      ____________________________________________________________
consensus ATTGAGAGATCGGGAACAGCCAGTGTTCAGCCCGAAATCGAAATCGTTCATAGAACCCGA
 
. : . : . : . : . : . :
JMSF044H05+ CTTCATATTCGATTTCCCGTAATTGGAATTCATTTCTTAATCTC----TCTGTGATGAAA
JMFF020L22+ CTTCATATTCGATTTCCCGTAATTGGAATTCATTTCTTAATCTCTCTATCTGTGATGAAA
JMFF025M20+ CTTCATATTCGATTTCCCGTAATTGGAATTCATTTCTTAATCTCTCTATCTGTGATGAAA
JMFF001N10+ CTTCATATTCGATTTCCCGTAATTGGAATTCATTTCTTAATCTCTCTATCTGTGATGAAA
                      ____________________________________________________________
consensus CTTCATATTCGATTTCCCGTAATTGGAATTCATTTCTTAATCTCTCTATCTGTGATGAAA
 
. : . : . : . : . : . :
JMSF044H05+ GTCGGATTGGAATTAGAGCTGAAAGTATGAGGAGAATGGATTGATCAGATAGCTTCACAA
JMFF020L22+ GTCGGATTGGAATTAGAGCTGAAAGTATGAGGAGAATGGATTGATCAGATAGCTTCACAA
JMFF025M20+ GTCGGATTGGAATTAGAGCTGAAAGTATGAGGAGAATGGATTGATCAGATAGCTTCACAA
JMFF001N10+ GTCGGATTGGAATTAGAGCTGAAAGTATGAGGAGAATGGATTGATCAGATAGCTTCACAA
                      ____________________________________________________________
consensus GTCGGATTGGAATTAGAGCTGAAAGTATGAGGAGAATGGATTGATCAGATAGCTTCACAA
 
. : . : . : . : . : . :
JMSF044H05+ CCGCCTTTGATGACGATCG
JMFF020L22+ CCGCCTTTGATGACGATCGGATTGAGAGAGAGAATGGCGTCCGGGAAGGGATCT
JMFF025M20+ CCGCCTTTGATGACGATCGGATTGAGAGAGAGAATGGCGTCCGGGAAGGGATCT
JMFF001N10+ CCGCCTTTGATGACGATCGGATTGAGAGAGAGAATGGCGTCCGGGAAGGGATCTAATTGT
                      ____________________________________________________________
consensus CCGCCTTTGATGACGATCGGATTGAGAGAGAGAATGGCGTCCGGGAAGGGATCTAATTGT