Contig 004433:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006D07Sequence416004433 (4)
JMCP006F04Sequence415004433 (4)
JMCP007A09Sequence143004433 (4)
JMCP018C12Sequence434004433 (4)ref|XP_002862422.1|4e-04predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH38680.1| predicted pr

Alignment

This contig is upended


. : . : . : . : . : . :
JMCP018C12+ AA
                      ____________________________________________________________
consensus AA
 
. : . : . : . : . : . :
JMCP018C12+ ACTTCAGCAATGAGTAAACTCTGTATTACCAACTTAAACGTTTCACACAATTTGTTACAC
rJMCP006F04+ GCAATGAGTAAACTCTGTATTACCAACTTAAACGTTTCACACAATTTGTTACAC
rJMCP006D07+ GCAATGAGTAAACTCTGTATTACCAACTTAAACGTTTCACACAATTTGTTACAC
                      ____________________________________________________________
consensus ACTTCAGCAATGAGTAAACTCTGTATTACCAACTTAAACGTTTCACACAATTTGTTACAC
 
. : . : . : . : . : . :
JMCP018C12+ ACCTATATAAAGCAAATGCCCCTACACTACCCTAAGACAAAAAGGGGAGAAAATTTGATG
rJMCP006F04+ ACCTATATAAAGCAAATGCCCCTACACTACCCTAAGACAAAAAGGGGAGAAAATTTGATG
rJMCP006D07+ ACCTATATAAAGCAAATGCCCCTACACTACCCTAAGACAAAAAGGGGAGAAAATTTGATG
                      ____________________________________________________________
consensus ACCTATATAAAGCAAATGCCCCTACACTACCCTAAGACAAAAAGGGGAGAAAATTTGATG
 
. : . : . : . : . : . :
JMCP018C12+ CTACAACGACACGACTAAGGTAAAATGGCATGATGATACGCAGACAACAATGCGAACTCA
rJMCP006F04+ CTACAACGACACGACTAAAGTAAAATGGCATGATGATACGCAGACAACAATGCGAACTCA
rJMCP006D07+ CTACAACGACACGACTAAAGTAAAtTGGCATGATGATACGCAGACAACAATGCGAACTCA
                      ____________________________________________________________
consensus CTACAACGACACGACTAAAGTAAAATGGCATGATGATACGCAGACAACAATGCGAACTCA
 
. : . : . : . : . : . :
JMCP018C12+ ATTATACATGGAAGTTTGCCTCGACGATGCAACTGGCACAAATATACAATATTCCTG
rJMCP006F04+ ATTATACATGGAAGTTTGCCTCGACGATGCAACTGGCACAAATATACAATATTCCTGTAC
rJMCP006D07+ ATTATACATGGAAGTTTGCCTCGACGATGCAtCTGGCACAAATATACAATATTCCTGTAC
                      ____________________________________________________________
consensus ATTATACATGGAAGTTTGCCTCGACGATGCAACTGGCACAAATATACAATATTCCTGTAC
 
. : . : . : . : . : . :
rJMCP006F04+ AACCATAAAATGTTCTTCCTCGACAAACATTGCAATCGATAGACAAAGAATCTGCAAGCA
rJMCP006D07+ AACCATAAAATGTTCTTCCTCGACAAACATTGCAATCGATAGACAAAGAATCTGCAAGCA
                      ____________________________________________________________
consensus AACCATAAAATGTTCTTCCTCGACAAACATTGCAATCGATAGACAAAGAATCTGCAAGCA
 
. : . : . : . : . : . :
rJMCP006F04+ CAGCACTTCTCAAGAAGATTACCTGGTTGGAATTCTAGTGAAGTAATATCTCAGATAGAC
JMCP007A09+ CCTGGTTGGAATTCTAGTcAAGTAATATgaCAGATAGAC
rJMCP006D07+ CAGCACTTCTCAAGAAGATTACCTGGTTGGAATTCTAGTGAAGTAATATCTCAGATAGAC
                      ____________________________________________________________
consensus CAGCACTTCTCAAGAAGATTACCTGGTTGGAATTCTAGTGAAGTAATATCTCAGATAGAC
 
. : . : . : . : . : . :
rJMCP006F04+ GTGCCTCTGCATCAGCTGGAATATCTCTTCCTGGAACCTGGACCTTTAGAAGACTCGAAT
JMCP007A09+ GTGCCagacgtagtcgaGGAATATCagaTCCTGGAAggaGGACCTTTAGAAGACTCGAAT
rJMCP006D07+ GTGCCTCTGCATCAGCTGGAATATCTCTTCCTGGAACCTGGACCTTTAGAAGACTCGAAT
                      ____________________________________________________________
consensus GTGCCTCTGCATCAGCTGGAATATCTCTTCCTGGAACCTGGACCTTTAGAAGACTCGAAT