Contig 004430:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP008C08Sequence363004430 (4)dbj|BAD18101.1|2e-16hypothetical protein [Ipomoea batatas]
JMCP010D11Sequence201004430 (4)
JMCP018F07Sequence201004430 (4)
JMCP018G12Sequence363004430 (4)dbj|BAD18101.1|2e-16hypothetical protein [Ipomoea batatas]

Alignment

This contig is upended


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JMCP010D11+                          CTTACTTTCCCTTCTTTCTTTTagTTCTTTCTCTTTTTTCTGTTT
rJMCP018F07+                       GACTTATTTTCCCTTCTTTCTTTTTCTTCTTTCTCTTTTTTCTGTTT
                      ____________________________________________________________
consensus                          GACTTATTTTCCCTTCTTTCTTTTTCTTCTTTCTCTTTTTTCTGTTT
 
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JMCP010D11+           TTCCTTTTTTCCATATTTCCATCTGAACGAGCAAAAGTACAAGTACAATCAGGGGGGATC
rJMCP018F07+          TTCCTTTTTTCCATATTTCCATCTGAACGAGCAAAAGTACAAGTACAATCAGGGGGGATC
JMCP008C08+                                            AAAGTACAAGTACAATCACGGGGGATC
JMCP018G12+                                            AAAGTACAAGTACAATCACGGGGGATC
                      ____________________________________________________________
consensus             TTCCTTTTTTCCATATTTCCATCTGAACGAGCAAAAGTACAAGTACAATCAGGGGGGATC
 
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JMCP010D11+           ATCAATATCAAAAAACACATAGGGCACATCATCATGTATCAGgAAGGCACGGACCCTACG
rJMCP018F07+          ATCAATATCAAAAAACACATAGGGCACATCATCATGTATCAGCAAGGCACGGACCCTACG
JMCP008C08+           ATCAATATCAAAAAACACATAGGGCACATCATCATGTATCAGTAAAGCACGGACCCTACG
JMCP018G12+           ATCAATATCAAAAAACACATAGGGCACATCATCATGTATCAGTAAAGCACGGACCCTACG
                      ____________________________________________________________
consensus             ATCAATATCAAAAAACACATAGGGCACATCATCATGTATCAGTAAGGCACGGACCCTACG
 
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JMCP010D11+           TGGCAGATCATTGAGGgagCGAAAGATGGCgagC                          
rJMCP018F07+          TGGCAGATCATTGAGGCTCCGAAAGATGGCCTCC                          
JMCP008C08+           TGGCAGATCATTGAGGCTCCGAAAGATGGCCTCCCCCGGCTTATCCACCGCCCAGTTAGC
JMCP018G12+           TGGCAGATCATTGAGGCTCCGAAAGATGGCCTCCCCCGGCTTATCCACCGCCCAGTTAGC
                      ____________________________________________________________
consensus             TGGCAGATCATTGAGGCTCCGAAAGATGGCCTCCCCCGGCTTATCCACCGCCCAGTTAGC
 
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JMCP008C08+           TAGCGCCTGTGCAGGCATATTGGCCCTGGACGGGCACACAGAAGCAGTAACCACCCCACA
JMCP018G12+           TAGCGCCTGTGCAGGCATATTGGCCCTGGACGGGCACACAGAAGCAGTAACCACCCCACA
                      ____________________________________________________________
consensus             TAGCGCCTGTGCAGGCATATTGGCCCTGGACGGGCACACAGAAGCAGTAACCACCCCACA
 
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JMCP008C08+           GGAACACAGAAACCGGAGTCTGGTCACAACATCATCTAGAATCCACGGCGGACGAACAGA
JMCP018G12+           GGAACACAGAAACCGGAGTCTGGTCACAACATCATCTAGAATCCACGGCGGACGAACAGA
                      ____________________________________________________________
consensus             GGAACACAGAAACCGGAGTCTGGTCACAACATCATCTAGAATCCACGGCGGACGAACAGA
 
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JMCP008C08+           GATATCAACATAGCTAGCCAACTCCGCCCAAGTGGACTCTATATCAATCAAAGTAGTTCC
JMCP018G12+           GATATCAACATAGCTAGCCAACTCCGCCCAAGTGGACTCTATATCAATCAAAGTAGTTCC
                      ____________________________________________________________
consensus             GATATCAACATAGCTAGCCAACTCCGCCCAAGTGGACTCTATATCAATCAAAGTAGTTCC