Contig 004427:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF049O13+                     TTNAGNNCTNNNTTTTCCACAAGGAAATTTATTAGTGATATTATTTAGAG
rJMFF001C03-                                                           ATTATTTAGAG
rJMFF017M11-                                                           ATTATTTAGAG
                      ____________________________________________________________
consensus                       TTNAGNNCTNNNTTTTCCACAAGGAAATTTATTAGTGATATTATTTAGAG
 
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JMSF049O13+           CTGCATATTGATATCATGATCTCATCAAAACATATAGCAAACTGACATTACAAAACATTC
rJMSF049O13-                ATTGATATCATGATCTCATCAAAACATATAGCAAACTGACATTACAAAACATTC
rJMFF001C03-          CTGCATATTGATATCATGATCTCATCAAAACATATAGCAAACTGACATTACAAAACATTC
JMFN008N16+                                                                 ACATTC
rJMFF017M11-          CTGCATATTGATATCATGATCTCATCAAAACATATAGCAAACTGACATTACAAAACATTC
                      ____________________________________________________________
consensus             CTGCATATTGATATCATGATCTCATCAAAACATATAGCAAACTGACATTACAAAACATTC
 
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JMSF049O13+           CCCCTCATCATAATCCTCAATAATGATAAGAGGAGGATAGCAGTAATAAAAAGAAAAATA
rJMSF049O13-          CCCCTCATCATAATCCTCAATAATGATAAGAGGAGGATAGCAGTAATAAAAAGAAAAATA
rJMFF001C03-          CCCCTCATCATAATCCTCAATAATGATAAGAGGAGGATAGCAGTAATAAAAAGAAAAATA
JMFN008N16+           CCCCTCATCATAATCCTCAATAATGATAAGAGGAGGATAGCAGTAATAAAAAGAAAAATA
JMFN029C01+                           TCAATAATGATAAGAAGAGGATAGCAGTAATAAAAAGAAAATTA
rJMFF017M11-          CCCCTCATCATAATCCTCAATAATGATAAGAGGAGGATAGCAGTAATAAAAAGAAAAATA
JMCP016E08+                                                          AAAAAGAAAAATA
                      ____________________________________________________________
consensus             CCCCTCATCATAATCCTCAATAATGATAAGAGGAGGATAGCAGTAATAAAAAGAAAAATA
 
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JMSF049O13+           AAGGCATTCAAAGTCTAAAAGTCCCCACTCCCCATGAAGCATCCCAC-TTTTTTCCACTT
rJMSF049O13-          AAGGCATTCAAAGTCTAAAAGTCCCCACTCCCCATGAAGCATCCCAC-TTTTTTCCACTT
rJMFF001C03-          AAGGCATTCAAAGTCTAAAAGTCCCCACTCCCCATGAAGCATCCCAC-TTTTTTCCACTT
JMFN008N16+           AAGGCATTCAAAGTCTAAAAGTCCCCACTCCCCATGAAGCATCCCAC-TTTTTTCCACTT
JMFN029C01+           AAGGCATTCAAAGTTTAAAAGTCCCCACTCCCCAGGAAGCATCCCACTTTTTTTCCACTT
rJMFF017M11-          AAGGCATTCAAAGTCTAAAAGTCCCCACTCCCCATGAAGCATCCCAC-TTTTTTCCACTT
JMCP016E08+           AAGGCATTCAAAGTCTAAAAGTCCCCACTCCCCATGAAGCATCCCAC-TTTTTTCCACTT
                      ____________________________________________________________
consensus             AAGGCATTCAAAGTCTAAAAGTCCCCACTCCCCATGAAGCATCCCAC-TTTTTTCCACTT
 
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JMSF049O13+           TCATTCACCACTGTACCTTAACTCTGAATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
rJMSF049O13-          TCATTCACCACTGTACCTTAACTCTGAATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
rJMFF001C03-          TCATTCACCACTGTACCTTAACTCTGAATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
JMFN008N16+           TCATTCACCACTGTACCTTAACTCTGAATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
JMFN029C01+           TCATTCACCACTGTACCTTAACTGTGAATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
JMFF017M11+                                         TACTCAGCCTTTTCCACTGGAACTTCAGAG
JMFF001C03+                                     AATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
rJMFF017M11-          TCATTCACCACTGTACCTTAACTCTGAATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
JMCP016E08+           TCATTCACCACTGTACCTTAACTCTGAATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
                      ____________________________________________________________
consensus             TCATTCACCACTGTACCTTAACTCTGAATCTACTCAGCCTTTTCCACTGGAACTTCAGAG
 
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JMSF049O13+           TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
rJMSF049O13-          TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
rJMFF001C03-          TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
JMFN008N16+           TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
JMFN029C01+           TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
JMFF017M11+           TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
JMFF001C03+           TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
rJMFF017M11-          TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
JMCP016E08+           TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
                      ____________________________________________________________
consensus             TCAGCAGCAGATTCCACCACAGTCTCAGCAGCAGGAGGAGCCACCGCCGCTGCAGTTTCC
 
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JMSF049O13+           TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
rJMSF049O13-          TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
rJMFF001C03-          TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
JMFN008N16+           TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
JMFN029C01+           TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
JMFF017M11+           TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
JMFF001C03+           TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
rJMFF017M11-          TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
JMCP016E08+           TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
                      ____________________________________________________________
consensus             TCCGCCGTGGTCTCAGCAACCTCAGCAGGAGTTTCTTCTTTAGGTACTTCCTCTGCAACA
 
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JMSF049O13+           CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
rJMSF049O13-          CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
rJMFF001C03-          CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
JMFN008N16+           CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
JMFN029C01+           CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
JMFF017M11+           CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
JMFF001C03+           CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
rJMFF017M11-          CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
JMCP016E08+           CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
                      ____________________________________________________________
consensus             CCCTCTTCTGCCTTAGCTTCTTCAGAAGCTGCAGGCTCTGCTGCCGGAGCTCCAGATTCC
 
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JMSF049O13+           GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
rJMSF049O13-          GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
rJMFF001C03-          GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
JMFN008N16+           GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
JMFN029C01+           GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
JMFF017M11+           GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
JMFF001C03+           GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
rJMFF017M11-          GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
JMCP016E08+           GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
                      ____________________________________________________________
consensus             GCCGCCACTTCCTTGGTCTCAGCCTCTTCAGCTACCGGAGCTGCCACTTCTTGTGCTGTA
 
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JMSF049O13+           GTTTCTGATGC                                                 
rJMSF049O13-          GTTTCTGATGC                                                 
rJMFF001C03-          GTTTCTGATGCTCCTTCTTCCTTTGTCTCTGCAGGTTGTTCATCAGCAGCAGCTGCAGGT
JMFN008N16+           GTTTCTGATGCTCCTTCTTCCTTTGTCTCTGCAGGTTGTTCATCAGCAGCAGCTGCAGGT
JMFN029C01+           GTTTCTGATGCTCCTTCTTCCTTTGTCTCTGCAGGTTGTTCATCAGCAGCAGCTGCAGGT
JMFF017M11+           GTTTCTGATGCTCCTTCTTCCTTTGTCTCTGCAGGTTGTTCATCAGCAGCAGCTGCAGGT
JMFF001C03+           GTTTCTGATGCTCCTTCTTCCTTTGTCTCTGCAGGTTGTTCATCAGCAGCAGCTGCAGGT
rJMFF017M11-          GTTTCTGATGCTCCTTCTTCCTTTGTCTCTGCAGGTTGTTCATCAGCAGCAGCTGCAGGT
JMCP016E08+           GTTTCTGATGCTCCTTCTTCCTTTGTCTCTGCAGGTTGTTCATCAGCAGCAGCTGCAGGT
                      ____________________________________________________________
consensus             GTTTCTGATGCTCCTTCTTCCTTTGTCTCTGCAGGTTGTTCATCAGCAGCAGCTGCAGGT
 
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rJMFF001C03-          GGAGCCACCTCTTCTGCCTTTGGAGCCTCAGTGGTTGTGTTCACCTCAGCTACAACATCC
JMFN008N16+           GGAGCCACCTCTTCTGCCTTTGGAGCCTCAGTGGTTGTGTTCACCTCAGCTACAACATCC
JMFN029C01+           GGAGCCACCTCTTCTGCCTTTGGAGCCTCAGTGGTTGTGTTCACCTCAGCTACAACATCC
JMFF017M11+           GGAGCCACCTCTTCTGCCTTTGGAGCCTCAGTGGTTGTGTTCACCTCAGCTACAACATCC
JMFF001C03+           GGAGCCACCTCTTCTGCCTTTGGAGCCTCAGTGGTTGTGTTCACCTCAGCTACAACATCC
rJMFF017M11-          GGAGCCACCTCTTCTGCCTTTGGAGCCTCAGTGGTTGTGTTCACCTCAGCTACAACATCC
JMCP016E08+           GGAGCCACCTCTTCTGCCTTTGGAGCCTCAGTGGTTGTGTTCACCTCAGCTACAACATCC
                      ____________________________________________________________
consensus             GGAGCCACCTCTTCTGCCTTTGGAGCCTCAGTGGTTGTGTTCACCTCAGCTACAACATCC
 
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rJMFF001C03-          TCTGTCACTGTTGCCGGAACTGATTCAACCTCAGCAGTGGCCATTTC             
JMFN008N16+           TCTGTCACTGTTGCCGGAACTGATTCAACCTCAGCAGTGGCCATTTCAGGTGGTTGAAAG
JMFN029C01+           TCTGTCACTGTTGCCGGAACTGATTCAACCTCAGCAGTGGCCATTTCAGGTGG-TGAAAG
JMFF017M11+           TCTGTCACTGTTGCCGGAACTGATTCAACCTCAGCAGTGGCCATTTCAGGTGGTTGAAAG
JMFF001C03+           TCTGTCACTGTTGCCGGAACTGATTCAACCTCAGCAGTGGCCATTTCAGGTGGTTGAAAG
rJMFF017M11-          TCTGTCACTGTTGCCGGAACTGATTCAACCTCAGCAGTGGCCATTTCAGGTGGTTGAAAG
JMCP016E08+           TCTGTCACTGTTGCCGGAACTGATTCAACCTCAGCAGTGGCCATTTCAGGTGGTTGAAAG
                      ____________________________________________________________
consensus             TCTGTCACTGTTGCCGGAACTGATTCAACCTCAGCAGTGGCCATTTCAGGTGGTTGAAAG
 
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JMFN008N16+           AGAAGATGGAGAAGAGAAAGGA                                      
JMFN029C01+           AGAAGATGGAGAAGAGAAAGGATGCAATGGGGT                           
JMFF017M11+           AGAAGATGGAGAAGAGAAAGGATGCAATGGGGTGGCAAAGATAGCAAA            
JMFF001C03+           AGAAGATGGAGAAGAGAAAGGATGCAATGGGGTGGCAAAGATAGCAAA            
rJMFF017M11-          AGAAGATGGAGAAGAGAAAGGATGCAATGGGGTGGCAAAGATAGCAAA            
JMCP016E08+           AGAAGATGGAGAAGAGAAAGGATGCAATGGGGTGGCAAAGATAGCAAATTGATTGTGGTC
                      ____________________________________________________________
consensus             AGAAGATGGAGAAGAGAAAGGATGCAATGGGGTGGCAAAGATAGCAAATTGATTGTGGTC