clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF014C11 | Sequence | 479 | 005310 (4) | ref|XP_006366893.1| | 2e-36 | PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So | 800 | 004412 (3) | ref|XP_006366894.1| | 4e-124 | PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So |
JMSF050J15 | Sequence | 624 | 005310 (4) | ref|XP_006366893.1| | 5e-67 | PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So | 783 | 004412 (3) | ref|XP_006366894.1| | 6e-114 | PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So |
JMSF050O23 | Sequence | 653 | 005310 (4) | ref|XP_006366893.1| | 3e-78 | PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So | 648 | 004412 (3) | ref|XP_006366894.1| | 3e-94 | PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So |
This contig is upended
. : . : . : . : . : . :
rJMSF014C11+ TCTGCATGGATCTTGGTTATA
____________________________________________________________
consensus TCTGCATGGATCTTGGTTATA
. : . : . : . : . : . :
rJMSF014C11+ NTTTTTGCTGNGGCAGGACTGTTTATAGTTGGGATGAACTTTGGTTCGTTCATTTGTTCT
____________________________________________________________
consensus NTTTTTGCTGNGGCAGGACTGTTTATAGTTGGGATGAACTTTGGTTCGTTCATTTGTTCT
. : . : . : . : . : . :
rJMSF014C11+ CTTTATGCTCTTGGTCTCTTCCTGGGCACCATCTACTCTGTACCCCCGTTTCGCTTGAAG
____________________________________________________________
consensus CTTTATGCTCTTGGTCTCTTCCTGGGCACCATCTACTCTGTACCCCCGTTTCGCTTGAAG
. : . : . : . : . : . :
rJMSF014C11+ AGATTTCCAATTTTAGCATTTCTAATCATCGCCACGGTACGGGGTTTTCTCCTTAATTAT
____________________________________________________________
consensus AGATTTCCAATTTTAGCATTTCTAATCATCGCCACGGTACGGGGTTTTCTCCTTAATTAT
. : . : . : . : . : . :
rJMSF014C11+ GGCGTCTATTATGCCACAAGAGCAGCTCTGGGGTTAAGCTTTGAATGGAGCTCACCCGTG
rJMSF050O23+ AGCTCACCCGTG
rJMSF050J15+ AGCTCACCCGTG
____________________________________________________________
consensus GGCGTCTATTATGCCACAAGAGCAGCTCTGGGGTTAAGCTTTGAATGGAGCTCACCCGTG
. : . : . : . : . : . :
rJMSF014C11+ GCTTTCATTACAACTTTTGTCACGTTATTTGCTTTGGTTATTGCCATAACTAAGGATCTG
rJMSF050O23+ GCTTTCATTACAACTTTTGTCACGTTATTTGCTTTGGTTATTGCCATAACTAAGGATCTG
rJMSF050J15+ GCTTTCATTACAACTTTTGTCACGTTATTTGCTTTGGTTATTGCCATAACTAAGGATCTG
____________________________________________________________
consensus GCTTTCATTACAACTTTTGTCACGTTATTTGCTTTGGTTATTGCCATAACTAAGGATCTG
. : . : . : . : . : . :
rJMSF014C11+ CCCGATGTAGAAGGTGACCGAAAGTTTCAAATTTCTACTTTCGCTACTAAGCTTGGCGTG
rJMSF050O23+ CCCGATGTAGAAGGTGACCGAAAGTTTCAAATTTCTACTTTCGCTACTAAGCTTGGCGTG
rJMSF050J15+ CCCGATGTAGAAGGTGACCGAAAGTTTCAAATTTCTACTTTCGCTACTAAGCTTGGCGTG
____________________________________________________________
consensus CCCGATGTAGAAGGTGACCGAAAGTTTCAAATTTCTACTTTCGCTACTAAGCTTGGCGTG
. : . : . : . : . : . :
rJMSF014C11+ AGGAACATAGCATTCATGGGCTCGGGGCTCTTGTTGGTAAATTACATCGGTGCTGTATTG
rJMSF050O23+ AGGAACATAGCATTCATGGGCTCGGGGCTCTTGTTGGTAAATTACATCGGTGCTGTATTG
rJMSF050J15+ AGGAACATAGCATTCATGGGCTCGGGGCTCTTGTTGGTAAATTACATCGGTGCTGTATTG
____________________________________________________________
consensus AGGAACATAGCATTCATGGGCTCGGGGCTCTTGTTGGTAAATTACATCGGTGCTGTATTG
. : . : . : . : . : . :
rJMSF014C11+ GCTGCAATTTACATGCCTCATGCTTTCAGGAGCCGGTTGATGATACCATTTCATGCAGTC
rJMSF050O23+ GCTGCAATTTACATGCCTCATGCTTTCAGGAGCCGGTTGATGATACCATTTCATGCAGTC
rJMSF050J15+ GCTGCAATTTACATGCCTCATGCTTTCAGGAGCCGGTTGATGATACCATTTCATGCAGTC
____________________________________________________________
consensus GCTGCAATTTACATGCCTCATGCTTTCAGGAGCCGGTTGATGATACCATTTCATGCAGTC
. : . : . : . : . : . :
rJMSF014C11+ TTGGCAGTATGCTTAGTTTTCCAGACCTGGTTACTGGAAAAAGCGAACTATACTAAGGAA
rJMSF050O23+ TTGGCAGTATGCTTAGTTTTCCAGACCTGGTTACTGGAAAAAGCGAACTATACTAAGGAA
rJMSF050J15+ TTGGCAGTATGCTTAGTTTTCCAGACCTGGTTACTGGAAAAAGCGAACTATACTAAGGAA
____________________________________________________________
consensus TTGGCAGTATGCTTAGTTTTCCAGACCTGGTTACTGGAAAAAGCGAACTATACTAAGGAA
. : . : . : . : . : . :
rJMSF014C11+ GCAATTTCAGCATTCTACCGGTTTATATGGAATCTCTTCTACGCAGAGTATTTGCTATTC
rJMSF050O23+ GCAATTTCAGCATTCTACCGGTTTATATGGAATCTCTTCTACGCAGAGTATTTGCTATTC
rJMSF050J15+ GCAATTTCAGCATTCTACCGGTTTATATGGAATCTCTTCTACGCAGAGTATTTGCTATTC
____________________________________________________________
consensus GCAATTTCAGCATTCTACCGGTTTATATGGAATCTCTTCTACGCAGAGTATTTGCTATTC
. : . : . : . : . : . :
rJMSF014C11+ CCTTTCATCTAACGTGTAAGTTTCATTAGTGTCGGGAAATTTTTTCGAGGGCCATGGTTT
rJMSF050O23+ CCTTTCATCTAACGTGTAAGTTTCATTAGTGTCGGGAAATTTTTTCGAGGGCCATGGTTT
rJMSF050J15+ CCTTTCATCTAACGTGTAAGTTTCATTAGTGTCGGGAAATTTTTTCGAGGGCCATGGTTT
____________________________________________________________
consensus CCTTTCATCTAACGTGTAAGTTTCATTAGTGTCGGGAAATTTTTTCGAGGGCCATGGTTT
. : . : . : . : . : . :
rJMSF014C11+ AGCAGAGAAAGAGACAGTGTAGTATCTGTTTTATATATTTTCTCAATTAGTTGTAGCTCA
rJMSF050O23+ AGCAGAGAAAGAGACAGTGTAGTATCTGTTTTATATATTTTCTCAATTAGTTGTAGCTCA
rJMSF050J15+ AGCAGAGAAAGAGACAGTGTAGTATCTGTTTTATATATTTTCTCAATTAGTTGTAGCTCA
____________________________________________________________
consensus AGCAGAGAAAGAGACAGTGTAGTATCTGTTTTATATATTTTCTCAATTAGTTGTAGCTCA
. : . : . : . : . : . :
rJMSF014C11+ AATAGTCAATACTTCACCACAGAGAAAGAGAC
rJMSF050O23+ AATAGTCAATACTTCACCACAGAGAAAGAGAC
rJMSF050J15+ AATAGTCAATACTTCACCACAGAGAAAGAGACAGTGTAGTATCTGTGCCAATGTGTATAC
____________________________________________________________
consensus AATAGTCAATACTTCACCACAGAGAAAGAGACAGTGTAGTATCTGTGCCAATGTGTATAC