Contig 004409:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041H01Sequence423002425 (8)ref|XP_006345416.1|2e-41PREDICTED: cinnamoyl-CoA reductase 1-like [Solanum tuberosum]736004409 (3)ref|XP_004299809.1|1e-54PREDICTED: uncharacterized protein LOC101295420 isoform X1 [Fragaria vesca subs
JMSF050G18Sequence709004409 (3)ref|XP_009790552.1|6e-104PREDICTED: uncharacterized protein LOC104237992 isoform X1 [Nicotiana sylvestri763004409 (3)ref|XP_009790559.1|3e-77PREDICTED: uncharacterized protein LOC104237992 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF050G18- GAATCCTGCACTATTCCATCTCACCCACTGCTCCTCGCTCTTTCCGCGCG
                      ____________________________________________________________
consensus GAATCCTGCACTATTCCATCTCACCCACTGCTCCTCGCTCTTTCCGCGCG
 
. : . : . : . : . : . :
JMSF050G18- GCAAAAATTTGCACACTTTCAGTTTGCTAGGAAACGACGTCGCTTCATTACTTTTGCATC
                      ____________________________________________________________
consensus GCAAAAATTTGCACACTTTCAGTTTGCTAGGAAACGACGTCGCTTCATTACTTTTGCATC
 
. : . : . : . : . : . :
JMSF050G18- CACCTTGGAGCTCCCACTTCTTCCCTTTCCTATAGACCAGACACTTATCCCTTCAGAGAC
                      ____________________________________________________________
consensus CACCTTGGAGCTCCCACTTCTTCCCTTTCCTATAGACCAGACACTTATCCCTTCAGAGAC
 
. : . : . : . : . : . :
JMSF050G18- CAAGTCACTTCACTTGTATGAAGCCAGATACCTAGCTCTGCTAGATGAGTCTCTATTTAG
                      ____________________________________________________________
consensus CAAGTCACTTCACTTGTATGAAGCCAGATACCTAGCTCTGCTAGATGAGTCTCTATTTAG
 
. : . : . : . : . : . :
JMSF050G18- GAAAGAGAAGCTATTTGTACACTTTGTGTTGGATCCTATTGCGATTAATGATACATCTGG
                      ____________________________________________________________
consensus GAAAGAGAAGCTATTTGTACACTTTGTGTTGGATCCTATTGCGATTAATGATACATCTGG
 
. : . : . : . : . : . :
JMSF050G18- AGAAGCATCATTTGCAGCCAGATATTGTTGCTTAGTTGTTATAGAGAAAGTTGAGCGCTT
rJMSF041H01+ TTATAGAGAAAGTTGAGCGCTT
rJMSF050G18+ GCAGCCAGATATTGTTGCTTAGTTGTTATAGAGAAAGTTGAGCGCTT
                      ____________________________________________________________
consensus AGAAGCATCATTTGCAGCCAGATATTGTTGCTTAGTTGTTATAGAGAAAGTTGAGCGCTT
 
. : . : . : . : . : . :
JMSF050G18- AGATGTTGGCGCGTTTGTCTCTATAAGAGGCATAGGCCGTGTCAAGATTGTGCATTTTGT
rJMSF041H01+ NGATGTTGNCGCGTTNGTCTCTATAAGAGGCATAGNCCGTGTCAAGATTGTGCATTTNGT
rJMSF050G18+ AGATGTTGGCGCGTTTGTCTCTATAAGAGGCATAGGCCGTGTCAAGATTGTGCATTTTGT
                      ____________________________________________________________
consensus AGATGTTGGCGCGTTTGTCTCTATAAGAGGCATAGGCCGTGTCAAGATTGTGCATTTTGT
 
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JMSF050G18- GCAGGCAGAACCATACTTGAGGGGCATGGTCATACCATTTCAAGATAACATTCCACTCAC
rJMSF041H01+ GCAGGCAGAACCATACTNGAGGGGCATGGTCATACCATTTCANGATAACATTCCACTCNC
rJMSF050G18+ GCAGGCAGAACCATACTTGAGGGGCATGGTCATACCATTTCAAGATAACATTCCACTCAC
                      ____________________________________________________________
consensus GCAGGCAGAACCATACTTGAGGGGCATGGTCATACCATTTCAAGATAACATTCCACTCAC
 
. : . : . : . : . : . :
JMSF050G18- GGTTACAGATATAAGTTCCAAAGTTTCAGAGTTGAAGGAATCCATTTGCAGTTTGAATAG
rJMSF041H01+ GGTTACAGANATAAGTTCCAAAGTTTCAGAGTTGAAGGAATCCATTTGCAGTTTGAATAG
rJMSF050G18+ GGTTACAGATATAAGTTCCAAAGTTTCAGAGTTGAAGGAATCCATTTGCAGTTTGAATAG
                      ____________________________________________________________
consensus GGTTACAGATATAAGTTCCAAAGTTTCAGAGTTGAAGGAATCCATTTGCAGTTTGAATAG
 
. : . : . : . : . : . :
JMSF050G18- TTTAGAAATAAAGCTGAAGGCCCCTAAAGAAGAATTGTTGCAAACAATGACTGCCAACTC
rJMSF041H01+ TTTNGAAATAAAGNTGAAGGCCCCTAAAGAAGAATTGTTGCAAACAANGACTGCCAACTC
rJMSF050G18+ TTTAGAAATAAAGCTGAAGGCCCCTAAAGAAGAATTGTTGCAAACAATGACTGCCAACTC
                      ____________________________________________________________
consensus TTTAGAAATAAAGCTGAAGGCCCCTAAAGAAGAATTGTTGCAAACAATGACTGCCAACTC
 
. : . : . : . : . : . :
JMSF050G18- TATAGGGTGGGTGAAGAAGGCATCTTTACTCGATTGTGACAGCAATTTCATTCCATCCAT
rJMSF041H01+ TATAGGGTGGGTGAAGAAGGCATCTTTACTNGATTGNGACAGCAATTTCATTCCATCCAT
rJMSF050G18+ TATAGGGTGGGTGAAGAAGGCATCTTTACTCGATTGTGACAGCAATTTCATTCCATCCAT
                      ____________________________________________________________
consensus TATAGGGTGGGTGAAGAAGGCATCTTTACTCGATTGTGACAGCAATTTCATTCCATCCAT
 
. : . : . : . : . : . :
JMSF050G18- GGCTGAGCTTGTGTCCTTTGCAGCACTCCNACCTGNTTCAGGAGCAACCCGATCCGATG
rJMSF041H01+ GGCTGAGCTTGTGTCCTTTGCAGCACTCCAACCTGTTTCAGGAGCAACCCGATCCGATGT
rJMSF050G18+ GGCTGAGCTTGTGTCCTTTGCAGCACTCCAACCTGTTTCAGGAGCAACCCGATCCGATGT
                      ____________________________________________________________
consensus GGCTGAGCTTGTGTCCTTTGCAGCACTCCAACCTGTTTCAGGAGCAACCCGATCCGATGT
 
. : . : . : . : . : . :
rJMSF041H01+ GGTGAAATTGCAGAAGGAGAAGCTAAGAGCAATGCACATGAAAGACACAATGGAGAGGCT
rJMSF050G18+ GGTGAAATTGCAGAAGGAGAAGCTAAGAGCAATGCACATGAAAGACACAATGGAGAGGCT
                      ____________________________________________________________
consensus GGTGAAATTGCAGAAGGAGAAGCTAAGAGCAATGCACATGAAAGACACAATGGAGAGGCT
 
. : . : . : . : . : . :
rJMSF041H01+ AGACTTGTCGTCCNGATACGTGAGAGATAATATTTCCCTGGTCGCTGCAAANCTCGCGNT
rJMSF050G18+ AGACTTGTCGTCCAGATACGTGAGAGATAATATTTCCCTGGTCGCTGCAAAACTCGCGAT
                      ____________________________________________________________
consensus AGACTTGTCGTCCAGATACGTGAGAGATAATATTTCCCTGGTCGCTGCAAAACTCGCGAT
 
. : . : . : . : . : . :
rJMSF041H01+ TCAATCTTTAGATGCCCCCTAGCCCCCCCTCTTCATGTGTGGATTCAATGCCTGCCTGCA
rJMSF050G18+ TCAATCTTTAGATGCCCCCTAGCCCCCCCTCTTCATGTGTGGATTCAATGCCTGCCTGCA
                      ____________________________________________________________
consensus TCAATCTTTAGATGCCCCCTAGCCCCCCCTCTTCATGTGTGGATTCAATGCCTGCCTGCA
 
. : . : . : . : . : . :
rJMSF041H01+ AAAATCACCCACCAATNTCAGCTACACTATTTGACGAAAGAGAGAAATGTTGCAACGCAA
rJMSF050G18+ AAAATCACCCACCAATCTCAGCTACACTATTTGA-GAAAGAGAGAAATGTTGCAA-GCAA
                      ____________________________________________________________
consensus AAAATCACCCACCAATCTCAGCTACACTATTTGACGAAAGAGAGAAATGTTGCAACGCAA
 
. : . : . : . : . : . :
rJMSF041H01+ GATTGGAAGTTGTTAAGGAAAGAACATTTGATTATTTGTTGAACATTATTTATAATAGTT
rJMSF050G18+ GATTGGAA-TTGTTAAGGAAAGAACATTTGATTATTTGTTGAACATTATTTATAATA-TT
                      ____________________________________________________________
consensus GATTGGAAGTTGTTAAGGAAAGAACATTTGATTATTTGTTGAACATTATTTATAATAGTT
 
. : . : . : . : . : . :
rJMSF041H01+ GNTTACATTTTTCCACAAATGTCCAAGTTGTAATAANTGATAAAGTNTGCATAT
rJMSF050G18+ GTTTACATTTTTCCACAAATGTACAAGTTGTAATAAGTGATAAAGTATGCATATCTGCAT
                      ____________________________________________________________
consensus GTTTACATTTTTCCACAAATGTCCAAGTTGTAATAAGTGATAAAGTATGCATATCTGCAT