Contig 004407:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037K03Sequence531004407 (3)
JMSF039C12Sequence583003810 (2)ref|XP_009760591.1|9e-09PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Nicotiana sylvestris851004407 (3)ref|XP_009589146.1|8e-68PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Nicotiana tomentosif
JMSF050C04Sequence698003810 (2)ref|XP_009760592.1|2e-25PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Nicotiana sylvestris712004407 (3)ref|XP_009589146.1|8e-39PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Nicotiana tomentosif

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039C12+ GTTGTGTGATAAAAGGTGACGAAACCCACCTTAAAAACTCGAGCATTT
                      ____________________________________________________________
consensus GTTGTGTGATAAAAGGTGACGAAACCCACCTTAAAAACTCGAGCATTT
 
. : . : . : . : . : . :
rJMSF039C12+ CAAGAGGCTTGTGTTTTTTCGGTGGTTGAAGAACCTGCTGAGCATCTTGCTCAGTGGAGC
                      ____________________________________________________________
consensus CAAGAGGCTTGTGTTTTTTCGGTGGTTGAAGAACCTGCTGAGCATCTTGCTCAGTGGAGC
 
. : . : . : . : . : . :
rJMSF039C12+ TACTCTGTTGCCTTCTCTGAGCTGTCTTTTGTACCTGCTGTTCGGCTACGCAGTTTTTGC
                      ____________________________________________________________
consensus TACTCTGTTGCCTTCTCTGAGCTGTCTTTTGTACCTGCTGTTCGGCTACGCAGTTTTTGC
 
. : . : . : . : . : . :
rJMSF039C12+ AAGTCCACAAAGGTTGAGAGGTTCCGTCGAGAAATTAGGCAATTCATTCGTCAGGTTGAG
                      ____________________________________________________________
consensus AAGTCCACAAAGGTTGAGAGGTTCCGTCGAGAAATTAGGCAATTCATTCGTCAGGTTGAG
 
. : . : . : . : . : . :
rJMSF039C12+ GCAAATTCCGAATTTACAAATAAGAAGCGTATGACTGTTACATTTCTACCCAATGATTCA
rJMSF050C04+ TTCCGAATTTACAAATAAGAAGCGTATGACTGTTACATTTCTACCCAATGATTCA
                      ____________________________________________________________
consensus GCAAATTCCGAATTTACAAATAAGAAGCGTATGACTGTTACATTTCTACCCAATGATTCA
 
. : . : . : . : . : . :
rJMSF039C12+ GCTGCATCATCTTTTCTTGAGGATGAAAAAAAGGCAGGCATTAGCCCTTTGTCAAAATAT
rJMSF050C04+ GCTGCATCATCTTTTCTTGAGGATGAAAAAAAGGCAGGCATTAGCCCTTTGTCAAAATAT
                      ____________________________________________________________
consensus GCTGCATCATCTTTTCTTGAGGATGAAAAAAAGGCAGGCATTAGCCCTTTGTCAAAATAT
 
. : . : . : . : . : . :
rJMSF039C12+ GTTGGCACTCTTCGCCAGAGGGCACAACAAAGAAGCGAATCTTTAATTGAATCGAGTGTT
rJMSF037K03+ TGAATCGAGTGTT
rJMSF050C04+ GTTGGCACTCTTCGCCAGAGGGCACAACAAAGAAGCGAATCTTTAATTGAATCGAGTGTT
                      ____________________________________________________________
consensus GTTGGCACTCTTCGCCAGAGGGCACAACAAAGAAGCGAATCTTTAATTGAATCGAGTGTT
 
. : . : . : . : . : . :
rJMSF039C12+ ATTGTTGGTGAACGTTCATCACTATTTGGAAGTAAGGTGATGGAGGACGTT--GACGATG
rJMSF037K03+ ATTGNTGGTGAACGTTCATCACTATTNGGAAGTAAGGTGATGGAGGACGTTCGACCGATG
rJMSF050C04+ ATTGTTGGTGAACGTTCATCACTATTTGGAAGTAAGGTGATGGAGGACGTT--GACGATG
                      ____________________________________________________________
consensus ATTGTTGGTGAACGTTCATCACTATTTGGAAGTAAGGTGATGGAGGACGTT--GACGATG
 
. : . : . : . : . : . :
rJMSF039C12+ ATGATGATAGGGAAGACAAAGGTGATGCTATCTTCAATTCGTCTTGGCTACCAGGAGGCA
rJMSF037K03+ ATGATGATAGGGAAGACAAAGGTGATGCTATCTTCAATTCGTCCNGGNTACCAGGAGGCA
rJMSF050C04+ ATGATGATAGGGAAGACAAAGGTGATGCTATCTTCAATTCGTCTTGGCTACCAGGAGGCA
                      ____________________________________________________________
consensus ATGATGATAGGGAAGACAAAGGTGATGCTATCTTCAATTCGTCTTGGCTACCAGGAGGCA
 
. : . : . : . : . : . :
rJMSF039C12+ ATTCCAAGACAAAGCACTCGAAAGAGAAGAAGACAAAGAAAAGAAAGAGGTCAAAGGATG
rJMSF037K03+ ATTCCANGACANAGCACTCGNAAGATAAGAAGNCAAAGANAAGAAAGAGGTCAAAGGATG
rJMSF050C04+ ATTCCAAGACAAAGCACTCGAAAGAGAAGAAGACAAAGAAAAGAAAGAGGTCAAAGGATG
                      ____________________________________________________________
consensus ATTCCAAGACAAAGCACTCGAAAGAGAAGAAGACAAAGAAAAGAAAGAGGTCAAAGGATG
 
. : . : . : . : . : . :
rJMSF039C12+ GCGGTGTTTCTGATGAAGACATCGTGGAGGATTTGGTGCTTAGCTCTGATGAAGAAGGTT
rJMSF037K03+ GCGGTGTTTNTGATGAAGACATCGTGGAGGATTTGGTNNTNAGCTNNGATGANGAAGGTT
rJMSF050C04+ GCGGTGTTTCTGATGAAGACATCGTGGAGGATTTGGTGCTTAGCTCTGATGAAGAAGGTT
                      ____________________________________________________________
consensus GCGGTGTTTCTGATGAAGACATCGTGGAGGATTTGGTGCTTAGCTCTGATGAAGAAGGTT
 
. : . : . : . : . : . :
rJMSF039C12+ CCATGAGCGACACACCTACTGAAGACATCAGCAAGAAGCCGAAATCAACTGTAGAGCCAT
rJMSF037K03+ CCATGAGCGACACACCTTCTGAAGACATCAGCAAGAAGCCGAAATCAACTGTAGAGCCAT
rJMSF050C04+ CCATGAGCGACACACCTACTGAAGACATCAGCAAGAAGCCGAAATCAACTGTAGAGCCAT
                      ____________________________________________________________
consensus CCATGAGCGACACACCTACTGAAGACATCAGCAAGAAGCCGAAATCAACTGTAGAGCCAT
 
. : . : . : . : . : . :
rJMSF039C12+ CTAAGAAGAAAGGTAAGTTTAAGCCAAAGAAATCAAAAAAGAGAAAGCCTTCGAGTTAAT
rJMSF037K03+ CTAAGAAGAAAGGTAAGTTTAAGCCNAAGAAATCAAAANAGAGAAAGCCTTCGAGCTAAT
rJMSF050C04+ CTAAGAAGAAAGGTAAGTTTAAGCCAAAGAAATCAAAAAAGAGAAAGCCTTCGAGTTAAT
                      ____________________________________________________________
consensus CTAAGAAGAAAGGTAAGTTTAAGCCAAAGAAATCAAAAAAGAGAAAGCCTTCGAGTTAAT
 
. : . : . : . : . : . :
rJMSF039C12+ CAATTATCAAATTCATCGACATTTTTGCTGTGCTTAGGATTTTATAAAACAAGAAATTTC
rJMSF037K03+ CAATNATCAAATTCATCGACATTTTTGCTGTGCTTAGGATTCTATAAANCANGAAATTTC
rJMSF050C04+ CAATTATCAAATTCATCGACATTTTTGCTGTGCTTAGGATTTTATAAAACAAGAAATTTC
                      ____________________________________________________________
consensus CAATTATCAAATTCATCGACATTTTTGCTGTGCTTAGGATTTTATAAAACAAGAAATTTC
 
. : . : . : . : . : . :
rJMSF039C12+ TTTGTAATGTTGCTCAAGCCCAA
rJMSF037K03+ TTTGTAATGNTGCTCAAGCCCAACTTTTGCGAAAATGNGAATCTAGTCCTAATTTTGCTT
rJMSF050C04+ TTTGTAATGTTGCTCAAGCCCAA-TTTTGAGAAAATGAGAATCTAGTCCTAATTTTGCTT
                      ____________________________________________________________
consensus TTTGTAATGTTGCTCAAGCCCAACTTTTGCGAAAATGAGAATCTAGTCCTAATTTTGCTT
 
. : . : . : . : . : . :
rJMSF037K03+ TTTGTTTTCTCTGTTTT
rJMSF050C04+ TTTGTTTTCTCTGTTTTAATGGTCATTCTGTATTACACTTTAAATTATTTATTTGACCCC
                      ____________________________________________________________
consensus TTTGTTTTCTCTGTTTTAATGGTCATTCTGTATTACACTTTAAATTATTTATTTGACCCC