Contig 004401:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011K04Sequence354009562 (2)ref|XP_009617843.1|1e-18PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast612004401 (2)ref|XP_009759775.1|7e-41PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast
JMSF048O03Sequence698009562 (2)ref|XP_009617843.1|3e-67PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast540004401 (2)ref|XP_009759775.1|2e-43PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast

Alignment

This contig is upended


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rJMSF011K04+ GAGCAGCCTCCC
                      ____________________________________________________________
consensus GAGCAGCCTCCC
 
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rJMSF011K04+ AAGTTTGATTTCCNCAACCCGAAGACACCNTTTTATACTTCNCCGNGATTTTTNCCTCCT
                      ____________________________________________________________
consensus AAGTTTGATTTCCNCAACCCGAAGACACCNTTTTATACTTCNCCGNGATTTTTNCCTCCT
 
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rJMSF011K04+ ACTAAAGTCGACAAGTGCNGAATAGTGGATTCGATTATTTCATACGGNTGCTTNTTGAGA
rJMSF048O03+ ACTAAAGTCGACAAGTGCNGAATAGTGGATTCGATTATTTCATACGGCTGCTTNTTGAGA
                      ____________________________________________________________
consensus ACTAAAGTCGACAAGTGCNGAATAGTGGATTCGATTATTTCATACGGCTGCTTNTTGAGA
 
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rJMSF011K04+ GAATGCAGCGTTCAACNTTNTATAATCGGNGTNCGATCCCGATTAGAGAATGGTGTTGAG
rJMSF048O03+ GAATGCAGCGTTCAACNTTCTATAATCGGTGTNCGATCCCGATTAGAGAATGGTGTTGAG
                      ____________________________________________________________
consensus GAATGCAGCGTTCAACNTTCTATAATCGGTGTNCGATCCCGATTAGAGAATGGTGTTGAG
 
. : . : . : . : . : . :
rJMSF011K04+ CTCAAAGATNCCNTGATGATGGGTGCGGNCTNTTATCNAACTCNAGCCGNGGTTGNTTNT
rJMSF048O03+ CTCAAAGATACCNTGATGATGAGTGCGGNCTATTATCAAACTCNAGCCGAGGTTGCTTNT
                      ____________________________________________________________
consensus CTCAAAGATACCNTGATGATGGGTGCGGNCTATTATCAAACTCNAGCCGAGGTTGCTTNT
 
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rJMSF011K04+ TTGCTTTTTGAGGGGAAGGTTCCNATTGGCGTCGGTCCNAACNCCNAAATCNGGAATTGT
rJMSF048O03+ TTGCTTTTTGAGGGGAAGGTTCCAATTGGCGTCGGTCCNAACNCCNAAATCNGGAATTGT
                      ____________________________________________________________
consensus TTGCTTTTTGAGGGGAAGGTTCCAATTGGCGTCGGTCCNAACNCCNAAATCNGGAATTGT
 
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rJMSF011K04+ ATAATNGACNAGAATGCCNGAATNGGGAAAGAAGTGATTNTTGCTAACAAAGAGGGCNTT
rJMSF048O03+ ATNATNGACNAGAATGCCNGAATCGGGAAAGAAGTGATTNTTGCTAACAAAGAGGGCNTT
                      ____________________________________________________________
consensus ATAATNGACNAGAATGCCNGAATCGGGAAAGAAGTGATTNTTGCTAACAAAGAGGGCNTT
 
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rJMSF011K04+ GATGAAGCCGAGAGGGCNGAGGATGGGTTTTACNTCNGGTCGGGGATAACTGTCATAGTA
rJMSF048O03+ GATGAAGCCGAGAGGGCNGAGGATGGGTTTTACATCNGGTCGGGGATAACTGTCATAGTA
                      ____________________________________________________________
consensus GATGAAGCCGAGAGGGCNGAGGATGGGTTTTACATCNGGTCGGGGATAACTGTCATAGTA
 
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rJMSF011K04+ AAGAACGCGNCCNTCAAAGNCNAGACNGTCNTATGAAGAAGTTGGCCGGCGGCTCGGGAG
rJMSF048O03+ AAGAACGCGNCCNTCAAAGNCNAGACNGTCNTATGAAGAAGTTGGCCGGCGGCTCGGGAG
                      ____________________________________________________________
consensus AAGAACGCGNCCNTCAAAGNCNAGACNGTCNTATGAAGAAGTTGGCCGGCGGCTCGGGAG
 
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rJMSF011K04+ GATGATNTATAGGGAATTNGAAGCNCNGCNTATNTGCCTTATTATTAGTTAATAAGCNGC
rJMSF048O03+ GATGATNTATAGGGAATTNGAAGCGCNGCNTATNTGCCTTATTATTAGTTAATAAGCTGC
                      ____________________________________________________________
consensus GATGATNTATAGGGAATTNGAAGCGCNGCNTATNTGCCTTATTATTAGTTAATAAGCTGC
 
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rJMSF011K04+ TAATAAGTAATAAGCCNTAGCTTCTCCCTTTTGTGTAAGTTCTGTGTTGTAAGNGAATTT
rJMSF048O03+ TAATAAGTAATAAGCCTTAGCTTCTCCNTTTTGNGTAAGTTCTGTGTTGTAAGNGAATTT
                      ____________________________________________________________
consensus TAATAAGTAATAAGCCTTAGCTTCTCCCTTTTGTGTAAGTTCTGTGTTGTAAGNGAATTT