Contig 004394:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009G21Sequence553010687 (5)ref|XP_002285123.1|2e-17PREDICTED: yrdC domain-containing protein, mitochondrial isoform X1 [Vitis vini717004394 (7)ref|XP_009798167.1|1e-104PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana
JMSF008F11Sequence350010687 (5)752004394 (7)ref|XP_009798167.1|2e-112PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana
JMSF021K18Sequence658010687 (5)ref|XP_009592140.1|1e-33PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo748004394 (7)ref|XP_009798167.1|2e-122PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana
JMSF022D14Sequence611010687 (5)ref|XP_009592140.1|3e-23PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo771004394 (7)ref|XP_009798167.1|7e-125PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana
JMSF045J05Sequence810004394 (7)ref|XP_009592140.1|1e-65PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo862004394 (7)ref|XP_009798167.1|8e-133PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana
JMSF047H02Sequence669015857778004394 (7)ref|XP_009798167.1|5e-109PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF045J05- GAGTCGACGTGTCTTCCTCCCTCACGAGTCATGATGAGT
                      ____________________________________________________________
consensus GAGTCGACGTGTCTTCCTCCCTCACGAGTCATGATGAGT
 
. : . : . : . : . : . :
JMSF045J05- CACGACTGTCGACAGACGGCGACTCACACCTCAACTTCCCCGCCGGCAAGCCGCTCCGCC
                      ____________________________________________________________
consensus CACGACTGTCGACAGACGGCGACTCACACCTCAACTTCCCCGCCGGCAAGCCGCTCCGCC
 
. : . : . : . : . : . :
JMSF045J05- GTGAGCCGTTGACGCCGCCTCTCTCTTCGCAAATCGCCGACGCCCCTCTTGACGACAGTC
                      ____________________________________________________________
consensus GTGAGCCGTTGACGCCGCCTCTCTCTTCGCAAATCGCCGACGCCCCTCTTGACGACAGTC
 
. : . : . : . : . : . :
JMSF045J05- GCCAGTACGCCTCTGTCGCTCTGTCTCTTCAATCTGCCCACTGTCGACCGTCTGTCTCGC
                      ____________________________________________________________
consensus GCCAGTACGCCTCTGTCGCTCTGTCTCTTCAATCTGCCCACTGTCGACCGTCTGTCTCGC
 
. : . : . : . : . : . :
JMSF045J05- TGCTCGCTTCACTCCGCCGACGGTGCCCTCCTATTGTCGACAGATTAAGAAAGCAGAGTT
                      ____________________________________________________________
consensus TGCTCGCTTCACTCCGCCGACGGTGCCCTCCTATTGTCGACAGATTAAGAAAGCAGAGTT
 
. : . : . : . : . : . :
JMSF045J05- TCCTGATGTGCATCGCCCCTAAAACTATAAGAATTGCGGCAATTGCCCAGTGGCTGCCCC
                      ____________________________________________________________
consensus TCCTGATGTGCATCGCCCCTAAAACTATAAGAATTGCGGCAATTGCCCAGTGGCTGCCCC
 
. : . : . : . : . : . :
JMSF045J05- TCTTCAACCCCTTCCTCCTCCCTTCCCCAGGGGTGATTAGGAAGTTTGGGTTTGTGAGAT
                      ____________________________________________________________
consensus TCTTCAACCCCTTCCTCCTCCCTTCCCCAGGGGTGATTAGGAAGTTTGGGTTTGTGAGAT
 
. : . : . : . : . : . :
JMSF045J05- TGGGGCAGCGCAAGAGGAGCTTTATTGGGGTTAGTGTGAAAACCAAGCTGGAGTTGAGAA
rJMSF045J05+ GGGGTTAGTGTGAAAACCAAGCTGGAGTTGAGAA
                      ____________________________________________________________
consensus TGGGGCAGCGCAAGAGGAGCTTTATTGGGGTTAGTGTGAAAACCAAGCTGGAGTTGAGAA
 
. : . : . : . : . : . :
JMSF045J05- TGGAGATTGATAGGATGGGAGTGGTGCAACCAGCAACAGAGGATTATGCTGAAGATGCAA
rJMSF045J05+ TGGAGATTGATAGGATGGGAGTGGTGCAACCAGCAACAGAGGATTATGCTGAAGATGCAA
                      ____________________________________________________________
consensus TGGAGATTGATAGGATGGGAGTGGTGCAACCAGCAACAGAGGATTATGCTGAAGATGCAA
 
. : . : . : . : . : . :
JMSF045J05- TTAAAGCTATCAAGTCTGGGAATGTTATTGCTGTCCCCACTGACACGCTCTATGGCTTTG
rJMSF045J05+ TTAAAGCTATCAAGTCTGGGAATGTTATTGCTGTCCCCACTGACACGCTCTATGGCTTTG
rJMSF021K18+ GTTATTGCTGTCCCCACCGACACGCTTTATGGCTTTG
rJMSF022D14+ AGCTATCCAGTCTGGGAATGTTATTGCTGTCCCCACCGACACGCTCTATGGCTTTG
rJMSF008F11+ G
                      ____________________________________________________________
consensus TTAAAGCTATCAAGTCTGGGAATGTTATTGCTGTCCCCACTGACACGCTCTATGGCTTTG
 
. : . : . : . : . : . :
JMSF045J05- CTTGTGACGCTTGTTCTGCTGAGGCAGTTAATCGTATATATGATATCAAAGGCCGTAAAT
rJMSF045J05+ CTTGTGACGCTTGTTCTGCTGAGGCAGTTAATCGTATATATGATATCAAAGGCCGTAAAT
rJMSF021K18+ CTTGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
rJMSF022D14+ CTTGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
rJMFF009G21+ TAACCGTATATATGATATCAAAGGTCGTAAAT
rJMSF008F11+ CTTGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
rJMSF047H02+ TGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
                      ____________________________________________________________
consensus CTTGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
 
. : . : . : . : . : . :
JMSF045J05- ATACAAATCCCCTGGCAATTTGTGTTGGGGATGTTCAAGACATACAAAAATATGCCATCA
rJMSF045J05+ ATACAAATCCCCTGGCAATTTGTGTTGGGGATGTTCAAGACATACAAAAATATGCCATCA
rJMSF021K18+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
rJMSF022D14+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
rJMFF009G21+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
rJMSF008F11+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
rJMSF047H02+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTNGAAGACATACANAAATACGCCATCA
                      ____________________________________________________________
consensus ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
 
. : . : . : . : . : . :
JMSF045J05- GTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF045J05+ GTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF021K18+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF022D14+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMFF009G21+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF008F11+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF047H02+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGN
                      ____________________________________________________________
consensus CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
 
. : . : . : . : . : . :
JMSF045J05- TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCTGGACTTG
rJMSF045J05+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCTGGACTTGAGAGCATAG
rJMSF021K18+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
rJMSF022D14+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
rJMFF009G21+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
rJMSF008F11+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
rJMSF047H02+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
                      ____________________________________________________________
consensus TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
 
. : . : . : . : . : . :
rJMSF045J05+ GGGTTCGAGTGCCCGATAATACATTTATTAGGGTTATTGCCCGTTGTTCTGGAAGTGCAC
rJMSF021K18+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
rJMSF022D14+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
rJMFF009G21+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
rJMSF008F11+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
rJMSF047H02+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
                      ____________________________________________________________
consensus GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
 
. : . : . : . : . : . :
rJMSF045J05+ TTGCACTTACCAGTGCAAACCTAAGCGGACAGCCCAGTAGCATCAACATTAGAGATTTTG
rJMSF021K18+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
rJMSF022D14+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
rJMFF009G21+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
rJMSF008F11+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
rJMSF047H02+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
                      ____________________________________________________________
consensus TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
 
. : . : . : . : . : . :
rJMSF045J05+ AGAACCTATGGGGCCACTGTGCTTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGTG
rJMSF021K18+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
rJMSF022D14+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
rJMFF009G21+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
rJMSF008F11+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
rJMSF047H02+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
                      ____________________________________________________________
consensus AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
 
. : . : . : . : . : . :
rJMSF045J05+ CAGGATCAACAGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMSF021K18+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMSF022D14+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMFF009G21+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMSF008F11+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMSF047H02+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
                      ____________________________________________________________
consensus CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
 
. : . : . : . : . : . :
rJMSF045J05+ GTGCGGAGGAAGAGACCGTTGCAATCCTCCAAAAACACTCTTTGGTAGAAGATGGAAGTG
rJMSF021K18+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
rJMSF022D14+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
rJMFF009G21+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
rJMSF008F11+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
rJMSF047H02+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGNTAGACGATGGAAGTG
                      ____________________________________________________________
consensus GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
 
. : . : . : . : . : . :
rJMSF045J05+ GTGTGCGGTGAG
rJMSF021K18+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
rJMSF022D14+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
rJMFF009G21+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
rJMSF008F11+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
rJMSF047H02+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
                      ____________________________________________________________
consensus GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
 
. : . : . : . : . : . :
rJMSF021K18+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
rJMSF022D14+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
rJMFF009G21+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
rJMSF008F11+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
rJMSF047H02+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
                      ____________________________________________________________
consensus ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
 
. : . : . : . : . : . :
rJMSF021K18+ GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCA
rJMSF022D14+ GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCATTCT
rJMFF009G21+ GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCATTCTTTTTT
rJMSF008F11+ GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCATTCTTTTTT
rJMSF047H02+ GACAATGTTGCTGATCATCTAGTTTCTTGTNCACTCATCATTGTGAAATCATTCTTTTTT
                      ____________________________________________________________
consensus GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCATTCTTTTTT
 
. : . : . : . : . : . :
rJMFF009G21+ GGTACGTCTAATATAAGGGAAG
rJMSF008F11+ GGTACGTCTAATATAAGGGAAG
rJMSF047H02+ GGTACGTCTAATATAAGGGAAGTGAAGGATCTGAACTGAACTTTACTGCATTGTCGAATG
                      ____________________________________________________________
consensus GGTACGTCTAATATAAGGGAAGTGAAGGATCTGAACTGAACTTTACTGCATTGTCGAATG