| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF036C10 | Sequence | 611 | 010813 (3) | gb|EYU33676.1| | 1e-37 | hypothetical protein MIMGU_mgv1a005174mg [Erythranthe guttata] | 715 | 004393 (3) | ref|XP_009591353.1| | 1e-61 | PREDICTED: putative BPI/LBP family protein At1g04970 [Nicotiana tomentosiformis |
| JMSF047D17 | Sequence | 717 | 010813 (3) | ref|XP_006346181.1| | 2e-66 | PREDICTED: putative BPI/LBP family protein At1g04970-like [Solanum tuberosum] | 731 | 004393 (3) | ref|XP_009591353.1| | 2e-56 | PREDICTED: putative BPI/LBP family protein At1g04970 [Nicotiana tomentosiformis |
| JMSF049P16 | Sequence | 305 | 004393 (3) | ref|XP_009591353.1| | 6e-29 | PREDICTED: putative BPI/LBP family protein At1g04970 [Nicotiana tomentosiformis | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF049P16+ TAAACACTGCCGAGTGGAGATTCATT
rJMSF036C10+ ACTAAACACTGCCGAGTGGAGATTCATT
rJMSF047D17+ GGAGATTCATT
____________________________________________________________
consensus ACTAAACACTGCCGAGTGGAGATTCATT
. : . : . : . : . : . :
rJMSF049P16+ ATCCCAAAGCTGTACAAACTATATCCTAATGATGACATGAGCCTGAATATTTCTGTATCT
rJMSF036C10+ ATCCCAAAGCTGTACAAACTATATCCTAATGATGACATGAGCCTGAATATTTCTGTATCT
rJMSF047D17+ ATCCCAAAGCTGTACAAACTATATCCTAATGATGACATGAGCCTGAATATTTCTGTATCT
____________________________________________________________
consensus ATCCCAAAGCTGTACAAACTATATCCTAATGATGACATGAGCCTGAATATTTCTGTATCT
. : . : . : . : . : . :
rJMSF049P16+ TCGACACCATCTATTAAAATCGAAGAACACCAGATATATGTGATGATTCCTGCAGATATA
rJMSF036C10+ TCGACACCATCTATTAAAATCGAAGAACACCAGATATATGTGATGATTCCTGCAGATATA
rJMSF047D17+ TCGACACCATCTATTAAAATCGAAGAACACCAGATATATGTGATGATTCCTGCAGATATA
____________________________________________________________
consensus TCGACACCATCTATTAAAATCGAAGAACACCAGATATATGTGATGATTCCTGCAGATATA
. : . : . : . : . : . :
rJMSF049P16+ ATTATTAATGTTCTGGATGAGGATGAAGTAGTACCCGTTGCATGCATTTCAGTGGAGATC
rJMSF036C10+ ATTATTAATGTTCTGGATGAGGATGAAGTAGTACCCGTTGCATGCATTTCAGTGGAGATC
rJMSF047D17+ ATTATTAATGTTCTGGATGAGGATGAAGTAGTACCCGTTGCATGCATTTCAGTGGAGATC
____________________________________________________________
consensus ATTATTAATGTTCTGGATGAGGATGAAGTAGTACCCGTTGCATGCATTTCAGTGGAGATC
. : . : . : . : . : . :
rJMSF049P16+ ACTGGCTGGGTTTCTGCAAAGAGTNTAANTAGTATTCNNTCNNGTAGCGTCAANTTAGAC
rJMSF036C10+ ACTGGCTGGGTTTCTGCAAAGATGTTAAGTAGTATTCTATCTGGTAGCGTCAAATTAGAC
rJMSF047D17+ ACTGGCTGGGTTTCTGCAAAGATGTTAAGTAGTATTCTATCTGGTAGCGTCAAATTAGAC
____________________________________________________________
consensus ACTGGCTGGGTTTCTGCAAAGATGTTAAGTAGTATTCTATCTGGTAGCGTCAAATTAGAC
. : . : . : . : . : . :
rJMSF049P16+ CNGTACACCNNGTCNTNGAAATGGAGTAAAATCGGTAAT
rJMSF036C10+ CACTACACCATGTCTTTGAAATGGAGTAAAATCGGTAATCTGCACTTGTTTCTTGTTCAG
rJMSF047D17+ CACTACACCATGTCTTTGAAATGGAGTAAAATCGGTAATCTGCACTTGTTTCTTGTTCAG
____________________________________________________________
consensus CACTACACCATGTCTTTGAAATGGAGTAAAATCGGTAATCTGCACTTGTTTCTTGTTCAG
. : . : . : . : . : . :
rJMSF036C10+ ACAATGATGTCCGCCATGCTGAGGACTGTGGTGCTGCCACTTGTGAATATACGCCTCCAG
rJMSF047D17+ ACAATGATGTCCGCCATGCTGAGGACTGTGGTGCTGCCACTTGTGAATATACGCCTCCAG
____________________________________________________________
consensus ACAATGATGTCCGCCATGCTGAGGACTGTGGTGCTGCCACTTGTGAATATACGCCTCCAG
. : . : . : . : . : . :
rJMSF036C10+ CTAGGATATCATCTGCCATCTTTCTACGGTTATGAGCTCCAAAACGCTGAAATCTTCTTC
rJMSF047D17+ CTAGGATATCATCTGCCATCTTTCTACGGTTATGAGCTCCAAAACGCTGAAATCTTCTTC
____________________________________________________________
consensus CTAGGATATCATCTGCCATCTTTCTACGGTTATGAGCTCCAAAACGCTGAAATCTTCTTC
. : . : . : . : . : . :
rJMSF036C10+ ACTGATTCATGGATTACAATAAGCAGTGATGTAGCTCCCATAAAACAGTTAAACTTCAGT
rJMSF047D17+ ACTGATTCATGGATTACAATAAGCAGTGATGTAGCTCCCATAAAACAGTTAAACTTCAGT
____________________________________________________________
consensus ACTGATTCATGGATTACAATAAGCAGTGATGTAGCTCCCATAAAACAGTTAAACTTCAGT
. : . : . : . : . : . :
rJMSF036C10+ TGTTCTCCTTCTTTATCTACTGTAACATCATCAGGCATGTACATGGTTTAGACAAACTGG
rJMSF047D17+ TGTTCTCCTTCTTTATCTACTGTAACATCATCAGGCATGTACATGGTTTAGACAAACTGG
____________________________________________________________
consensus TGTTCTCCTTCTTTATCTACTGTAACATCATCAGGCATGTACATGGTTTAGACAAACTGG
. : . : . : . : . : . :
rJMSF036C10+ GATCAGCAAGCAGGAAGCTAAGGTCTGTGTAAATTGTGATACATACAGTACATCACATTA
rJMSF047D17+ GATCAGCAAGCAGGAAGCTAAGGTCTGTGTAAATTGTGATACATACAGTACATCACATTA
____________________________________________________________
consensus GATCAGCAAGCAGGAAGCTAAGGTCTGTGTAAATTGTGATACATACAGTACATCACATTA
. : . : . : . : . : . :
rJMSF036C10+ TATTGTTGAAGTAGAGTAGTTAAGTTCTTCAAATTGAGATGATGATGAAGATTCTTTCAA
rJMSF047D17+ TATTGTTGAAGTAGAGTAGTTAAGTTCTTCAAATTGAGATGATGATGAAGATTCTTTCAA
____________________________________________________________
consensus TATTGTTGAAGTAGAGTAGTTAAGTTCTTCAAATTGAGATGATGATGAAGATTCTTTCAA
. : . : . : . : . : . :
rJMSF036C10+ ACTTTTGTTGTAAGATCAAAGATGCTG
rJMSF047D17+ ACTTTTGTTGTAAGATCAAAGATGCTGTAAATAAAGATTCATTTTCAATTCAAAAACTTT
____________________________________________________________
consensus ACTTTTGTTGTAAGATCAAAGATGCTGTAAATAAAGATTCATTTTCAATTCAAAAACTTT