Contig 004380:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003E20Sequence417002144 (3)emb|CDP02819.1|2e-05unnamed protein product [Coffea canephora]721004380 (3)emb|CDP02819.1|2e-49unnamed protein product [Coffea canephora]
JMSF012I05Sequence554002144 (3)emb|CDP02819.1|3e-20unnamed protein product [Coffea canephora]710004380 (3)emb|CDP02819.1|3e-47unnamed protein product [Coffea canephora]
JMSF044P03Sequence755002144 (3)emb|CDP02819.1|1e-68unnamed protein product [Coffea canephora]669004380 (3)ref|XP_009621595.1|6e-41PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform X1 [Nicoti

Alignment

This contig is upended


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rJMSF003E20+                                                            TGCTCGACCA
                      ____________________________________________________________
consensus                                                               TGCTCGACCA
 
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rJMSF012I05+            GGGAAATGCCAGAGAAGCAACCGCTGCAGCAATGGGTGTTGATGCTCCTCCAGAGGAG
rJMSF003E20+          AAGGGAAATGCCAGAGAAGCAACCGCTGCAGCAATGGGTGTTGATGCTCCTCCAGAGGAG
rJMSF044P03+                                                             CCAGAGGAG
                      ____________________________________________________________
consensus             AAGGGAAATGCCAGAGAAGCAACCGCTGCAGCAATGGGTGTTGATGCTCCTCCAGAGGAG
 
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rJMSF012I05+          CTTCAGGCAATTATAAATCAGGTTGCTGTAAATATACATGGTGTCTATGTTTTGAAGTCA
rJMSF003E20+          CTTCAGGCAATTATAAATCAGGTTGCTGTAAATATACATGGTGTCTATGTTTTGAAGTCA
rJMSF044P03+          CTTCAGGCAATTATAAATCAGGTTGCTGTAAATATACATGGTGTCTATGTTTNGAAGTCA
                      ____________________________________________________________
consensus             CTTCAGGCAATTATAAATCAGGTTGCTGTAAATATACATGGTGTCTATGTTTTGAAGTCA
 
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rJMSF012I05+          TCACCCGATTTTCCGCAGTATGATGCATTAAGGAAGGTGGTGATTGCTCTTTTAATTGCA
rJMSF003E20+          TCACCCGATTTTCCGCAGTATGATGCATTAAGGAAGGTGGTGATTGCTCTTTTAATTGCA
rJMSF044P03+          TCACCCGATTTTCCGCAGTATGATGCATTAAGGAAGGTGGTGATTGCTCTTTTAATTGCA
                      ____________________________________________________________
consensus             TCACCCGATTTTCCGCAGTATGATGCATTAAGGAAGGTGGTGATTGCTCTTTTAATTGCA
 
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rJMSF012I05+          GAAGGTCCTAATGCAAAGCTTAAAAGGGCTTCAGTTATTGAGGCTGCTAGGTTGCAACTT
rJMSF003E20+          GAAGGTCCTAATGCAAAGCTTAAAAGGGCTTCAGTTATTGAGGCTGCTAGGTTGCAACTT
rJMSF044P03+          GAAGGTCCTAATGCAAAGCTTAAAAGGGCTTCAGTTATTGAGGCTGCTAGGTTGCAACTT
                      ____________________________________________________________
consensus             GAAGGTCCTAATGCAAAGCTTAAAAGGGCTTCAGTTATTGAGGCTGCTAGGTTGCAACTT
 
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rJMSF012I05+          AACAAGGATATTACAGACACGGAGTTTCAGAAGGTTGTATCGGAGCTATGCGTATCACAA
rJMSF003E20+          AACAAGGATATTACAGACACGGAGTTTCAGAAGGTTGTATCGGAGCTATGCGTATCACAA
rJMSF044P03+          AACAAGGATATTACAGACACGGAGTTTCAGAAGGTTGTATCGGAGCTATGCGTATCACAA
                      ____________________________________________________________
consensus             AACAAGGATATTACAGACACGGAGTTTCAGAAGGTTGTATCGGAGCTATGCGTATCACAA
 
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rJMSF012I05+          AGTTCGGGTTGGGTTCTGAAACGCGGTGATGGAAGTCCAAAATAGCACTTTCAGAGCGCC
rJMSF003E20+          AGTTCGGGTTGGGTTCTGAAACGCGGTGATGGAAGTCCAAAATAGCACTTTCAGAGCGCC
rJMSF044P03+          AGTTCGGGTTGGGTTCTGAAACGCGGTGATGGAAGTCCAAAATAGCACTTTCAGAGCGCC
                      ____________________________________________________________
consensus             AGTTCGGGTTGGGTTCTGAAACGCGGTGATGGAAGTCCAAAATAGCACTTTCAGAGCGCC
 
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rJMSF012I05+          TATCAACTGTTGGAGCATATTTTTGCATTAAATTCCAGGAACTCCATAGTTCCAAAGATC
rJMSF003E20+          TATCAACTGTTGGAGCATATTTTTGCATTAAATTCCAGGAACTCCATAGTTCCAAAGATC
rJMSF044P03+          TATCAACTGTTGGAGCATATTTTTGCATTAAATTCCAGGAACTCCATAGTTCCAAAGATC
                      ____________________________________________________________
consensus             TATCAACTGTTGGAGCATATTTTTGCATTAAATTCCAGGAACTCCATAGTTCCAAAGATC
 
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rJMSF012I05+          ATTCTTCAACCTTGTATAACATGTTGAGATGTCAGCTATGATATAATGGATGCCATTGCC
rJMSF003E20+          ATTCTTCAACCTTGTATAACATGTTGAGATGTCAGCTATGATATAATGGATGCCATTGCC
rJMSF044P03+          ATTCTTCAACCTTGTATAACATGTTGAGATGTCAGCTATGATATAATGGATGCCATTGCC
                      ____________________________________________________________
consensus             ATTCTTCAACCTTGTATAACATGTTGAGATGTCAGCTATGATATAATGGATGCCATTGCC
 
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rJMSF012I05+          ATGTCGGGTGCTTTGCCGATATTACCTTCGGGAACTATTTGCTGCATCGGAAAGGTCAAG
rJMSF003E20+          ATGTCGGGTGCTTTGCCGATATTACCTTCGGGAACTATTTGCTGCATCGGAAAGGTCAAG
rJMSF044P03+          ATGTCGGGTGCTTTGCCGATATTACCTTCGGGAACTATTTGCTGCATCGGAAAGGTCAAG
                      ____________________________________________________________
consensus             ATGTCGGGTGCTTTGCCGATATTACCTTCGGGAACTATTTGCTGCATCGGAAAGGTCAAG
 
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rJMSF012I05+          ATGAACTCGGGGATCAAATTTGGACAACTTCTAATAGCTCAAGGCCTGAAATTCATAGTT
rJMSF003E20+          ATGAACTCGGGGATCAAATTTGGACAACTTCTAATAGCTCAAGGCCTGAAATTCATAGTT
rJMSF044P03+          ATGAACTCGGGGATCAAATTTGGACAACTTCTAATAGCTCAAGGCCTGAAATTCATAGTT
                      ____________________________________________________________
consensus             ATGAACTCGGGGATCAAATTTGGACAACTTCTAATAGCTCAAGGCCTGAAATTCATAGTT
 
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rJMSF012I05+          TGGCACTCAACATGAAAAATCATAGTGAATCTAGTGACAGGTTTTATTATTATTATTTTT
rJMSF003E20+          TGGCACTCAACATGAAAAATCATAGTGAATCTAGTGACAGGTTTTATTATTATTATTTTT
rJMSF044P03+          TGGCACTCAACATGAAAAATCATAGTGAATCTAGTGACAGGTTTTATTATTATTATTTTT
                      ____________________________________________________________
consensus             TGGCACTCAACATGAAAAATCATAGTGAATCTAGTGACAGGTTTTATTATTATTATTTTT
 
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rJMSF012I05+          TTGTTTATTTATAAAAAACCCATTTTTGTTGTTTGCTTTGAA                  
rJMSF003E20+          TTGTTTATTTATAAAAAACCCATTTTTGTTGTTTGCTTTGAA                  
rJMSF044P03+          TTGTTTATTTATAAAAAACCCATTTTTGTTGTTTGCTTTGAACGATTGAANCCTTGTGCA
                      ____________________________________________________________
consensus             TTGTTTATTTATAAAAAACCCATTTTTGTTGTTTGCTTTGAACGATTGAANCCTTGTGCA