| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001N18 | Sequence | 267 | 013201 (3) | ref|XP_010693188.1| | 1e-07 | PREDICTED: uncharacterized protein LOC104906171 isoform X1 [Beta vulgaris subsp | 751 | 004379 (3) | ref|XP_006338380.1| | 5e-32 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] |
| JMSF018K08 | Sequence | 578 | 013201 (3) | ref|XP_006338380.1| | 8e-58 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] | 771 | 004379 (3) | ref|XP_006338380.1| | 1e-31 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] |
| JMSF044M03 | Sequence | 763 | 013201 (3) | ref|XP_006338380.1| | 9e-95 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] | 679 | 004379 (3) | ref|XP_006338380.1| | 4e-25 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF001N18+ AAGGTAGGAAAGCAGTGGAGTCCAAGTCTTTCTAGAGTTGAGGATGCCACTTTGA
rJMSF018K08+ AGGTAGGAAAGCAGTGGAGTCCAAGTCTTTCTAGAGTTGAGGATGCCACTTTGA
____________________________________________________________
consensus AAGGTAGGAAAGCAGTGGAGTCCAAGTCTTTCTAGAGTTGAGGATGCCACTTTGA
. : . : . : . : . : . :
rJMSF001N18+ AGGAACCTGATACTGTTCAGTACTCAAAACAAATTCGTCTCCCTGTTGATTCCTATGGCC
rJMSF018K08+ AGGAACCTGATACTGTTCAGTACTCAAAACAAATTCGTCTCCCTGTTGATTCCTATGGCC
rJMSF044M03+ CCTGTTGATTCCTATGGCC
____________________________________________________________
consensus AGGAACCTGATACTGTTCAGTACTCAAAACAAATTCGTCTCCCTGTTGATTCCTATGGCC
. : . : . : . : . : . :
rJMSF001N18+ CACATTTGCCATCCCCTGGTAGTAGGTCTGGACTATACGGAGATCTCTATTCGCCAACAT
rJMSF018K08+ CACATGTGCCATCCCCTGGTAGTAGGTCTGGACTATACGGAGATCTCTATTCGCCAACAT
rJMSF044M03+ CACATGTGCCATCCCCTGGTAGTAGGTCTGGACTATACGGAGATCTCTATTCGCCAACAT
____________________________________________________________
consensus CACATGTGCCATCCCCTGGTAGTAGGTCTGGACTATACGGAGATCTCTATTCGCCAACAT
. : . : . : . : . : . :
rJMSF001N18+ TACCACACCATTTATGGCAGGGTCGAGTGACGCCAGGACTTGAGGAAACTAGCCCTCCCC
rJMSF018K08+ TACCACACCATTTATGGCAGGGTCGAGTGACGCCAGGACTTGAGGAAACTAGCCCTCCCC
rJMSF044M03+ TACCACACCATTTATGGCAGGGTCGAGTGACGCCAGGACTTGAGGAAACTAGCCCTCCCC
____________________________________________________________
consensus TACCACACCATTTATGGCAGGGTCGAGTGACGCCAGGACTTGAGGAAACTAGCCCTCCCC
. : . : . : . : . : . :
rJMSF001N18+ TACAGATTAGATCAAGTACTTCTGCTGCTTATGGCAGAGCGGGACCACCATTCTACAGCA
rJMSF018K08+ TACAGATTAGATCAAGTACTTCTGCTGCTTATGGCAGAGCGGGACCACCATTCTACAGCA
rJMSF044M03+ TACAGATTAGATCAAGTACTTCTGCTGCTTATGGCAGAGCGGGACCACCATTCTACAGCA
____________________________________________________________
consensus TACAGATTAGATCAAGTACTTCTGCTGCTTATGGCAGAGCGGGACCACCATTCTACAGCA
. : . : . : . : . : . :
rJMSF001N18+ TCGAGGAAACTAGCCCTCCTCTGCAGAGGCCACTGAGTTCTGCAGCAGCCTATGGGAGAG
rJMSF018K08+ TCGAGGAAACTAGCCCTCCTCTGCAGAGGCCACTGAGTTCTGCAGCAGCCTATGGGAGAG
rJMSF044M03+ TCGAGGAAACTAGCCCTCCTCTGCAGAGGCCACTGAGTTCTGCAGCAGCCTATGGGAGAG
____________________________________________________________
consensus TCGAGGAAACTAGCCCTCCTCTGCAGAGGCCACTGAGTTCTGCAGCAGCCTATGGGAGAG
. : . : . : . : . : . :
rJMSF001N18+ TTGTAGCAACGTTAAGAGGAGCAGAGGAAGCTAGTGCTCGTCTGCCGGTACCACCCAGTT
rJMSF018K08+ TTGTAGCAACGTTAAGAGGAGCAGAGGAAGCTAGTGCTCGTCTGCCGGTACCACCCAGTT
rJMSF044M03+ TTGTAGCAACGTTAAGAGGAGCAGAGGAAGCTAGTGCTCGTCTGCCGGTACCACCCAGTT
____________________________________________________________
consensus TTGTAGCAACGTTAAGAGGAGCAGAGGAAGCTAGTGCTCGTCTGCCGGTACCACCCAGTT
. : . : . : . : . : . :
rJMSF001N18+ CTTCTGCAGCTTATGGGAGAGTTGTAGCAACTTTAAGAGGAGGAGCAGAGGAAGCTAATG
rJMSF018K08+ CTTCTGCAGCTTATGGGAGAGTTGTAGCAACTTTAAGAGGAGGAGCAGAGGAAGCTAATG
rJMSF044M03+ CTTCTGCAGCTTATGGGAGAGTTGTAGCAACTTTAAGAGGAGGAGCAGAGGAAGCTAATG
____________________________________________________________
consensus CTTCTGCAGCTTATGGGAGAGTTGTAGCAACTTTAAGAGGAGGAGCAGAGGAAGCTAATG
. : . : . : . : . : . :
rJMSF001N18+ CCCGTCTGCAGGTACCACCAAGTTCCGCTGCAGCTTATGGGAGAGTGGGATTAAACTCTT
rJMSF018K08+ CCCGTCTGCAGGTACCACCAAGTTCCGCTGCAGCTTATGGGAGAGTGGGATTAAACTCTT
rJMSF044M03+ CCCGTCTGCAGGTACCACCAAGTTCCGCTGCAGCTTATGGGAGAGTGGGATTAAACTCTT
____________________________________________________________
consensus CCCGTCTGCAGGTACCACCAAGTTCCGCTGCAGCTTATGGGAGAGTGGGATTAAACTCTT
. : . : . : . : . : . :
rJMSF001N18+ ACACCGCAAATGTTGCTGATCATCAACCTACTCGATCTCAAGTAAGGTTTGATCCTTTCA
rJMSF018K08+ ACACCGCAAATGTTGCTGATCATCAACCTACTCGATCTCAAGTAAGGTTTGATCCTTTCA
rJMSF044M03+ ACACCGCAAATGTTGCTGATCATCAACCTACTCGATCTCAAGTAAGGTTTGATCCTTTCA
____________________________________________________________
consensus ACACCGCAAATGTTGCTGATCATCAACCTACTCGATCTCAAGTAAGGTTTGATCCTTTCA
. : . : . : . : . : . :
rJMSF001N18+ CTGGGGAACCTTTCAAATTTGACCCCTTCACTGGAGAACCTATCCTTCCTGAGAGCTCGT
rJMSF018K08+ CTGGGGAACCTTTCAAATTTGACCCCTTCACTGGAGAACCTATCCTTCCTGAGAGCTCGT
rJMSF044M03+ CTGGGGAACCTTTCAAATTTGACCCCTTCACTGGAGAACCTATCCTTCCTGAGAGCTCGT
____________________________________________________________
consensus CTGGGGAACCTTTCAAATTTGACCCCTTCACTGGAGAACCTATCCTTCCTGAGAGCTCGT
. : . : . : . : . : . :
rJMSF001N18+ CACGCTAATTTTTAAATCCGCACTGATGATATTTGTTCTTGTTGTCCAAACTATGTCGGT
rJMSF018K08+ CACGCTAATTTTTAAATCCGCACTGATGATATTTGTTCTTGTTGTCCAAACTATGTCGGT
rJMSF044M03+ CACGCTAATTTTTAAATCCGCACTGATGATATTTGTTCTTGTTGTCCAAACTATGTCGGT
____________________________________________________________
consensus CACGCTAATTTTTAAATCCGCACTGATGATATTTGTTCTTGTTGTCCAAACTATGTCGGT
. : . : . : . : . : . :
rJMSF001N18+ AAAGTTGAGTA
rJMSF018K08+ AAAGTTGAGTA-CTGTGGGTGTGAATTTTTAAATTTTTTTAGTATAATTGTGTACTTA
rJMSF044M03+ AAAGTTGAGTANCTGTGGGTGTGAATTTTTAAATTTTTTTAGTATAATTGTGTACTTATG
____________________________________________________________
consensus AAAGTTGAGTANCTGTGGGTGTGAATTTTTAAATTTTTTTAGTATAATTGTGTACTTATG