Contig 004377:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019F12Sequence559006687 (2)ref|XP_009762757.1|2e-05PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Nicotiana sylvestris803004377 (2)ref|XP_006341855.1|7e-49PREDICTED: ubiquitin-like-specific protease 1D-like isoform X3 [Solanum tuberos
JMSF044D03Sequence686006687 (2)ref|XP_009762756.1|1e-12PREDICTED: ubiquitin-like-specific protease 1D isoform X1 [Nicotiana sylvestris756004377 (2)ref|XP_006341855.1|4e-41PREDICTED: ubiquitin-like-specific protease 1D-like isoform X3 [Solanum tuberos

Alignment

This contig is upended


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rJMSF019F12+                                           GGAAGATGATCTGGACCAATTGTACTT
                      ____________________________________________________________
consensus                                              GGAAGATGATCTGGACCAATTGTACTT
 
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rJMSF019F12+          CATTTGGGNTCACTAATGNTCCACTGTAGCAAGCCAATATTTAACACCACCAGAAAGTTT
rJMSF044D03+                                  TGTAGCAAGCCAATATTTAACAACACCAGAAAGTTT
                      ____________________________________________________________
consensus             CATTTGGGNTCACTAATGNTCCACTGTAGCAAGCCAATATTTAACACCACCAGAAAGTTT
 
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rJMSF019F12+          TTGATAGAGGAATGGAAAACCTTGAAAGATGAAGGACCACATTTCCCCATTGCAGATAAA
rJMSF044D03+          TTGATAGAGGAATGGAAAACCTTGAAAGATGAAGGACCACATTTCCCCATTGCAGATAAA
                      ____________________________________________________________
consensus             TTGATAGAGGAATGGAAAACCTTGAAAGATGAAGGACCACATTTCCCCATTGCAGATAAA
 
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rJMSF019F12+          ATATGGGAGAGACTCCCTAGAAGAATTGAGGAAAAAGAAATTCAGGTTCCTCAACAAAAG
rJMSF044D03+          ATATGGGAGAGACTCCCTAGAAGAATTGAGGAAAAAGAAATTCAGGTTCCTCAACAAAAG
                      ____________________________________________________________
consensus             ATATGGGAGAGACTCCCTAGAAGAATTGAGGAAAAAGAAATTCAGGTTCCTCAACAAAAG
 
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rJMSF019F12+          AATGACTATGACTGCGGCCCCTTTGTACTTTTCTTTATAGAACGGTTTATTGATGAAGTT
rJMSF044D03+          AATGACTATGACTGCGGCCCCTTTGTACTTTTCTTTATAGAACGGTTTATTGATGAAGTT
                      ____________________________________________________________
consensus             AATGACTATGACTGCGGCCCCTTTGTACTTTTCTTTATAGAACGGTTTATTGATGAAGTT
 
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rJMSF019F12+          TCTGAGAGGCTGAAAAGGAAGGATCTAGATATGTTTGGAAAGAAGTGGTTCAAGCCTCAT
rJMSF044D03+          TCTGAGAGGCTGAAAAGGAAGGATCTAGATATGTTTGGAAAGAAGTGGTTCAAGCCTCAT
                      ____________________________________________________________
consensus             TCTGAGAGGCTGAAAAGGAAGGATCTAGATATGTTTGGAAAGAAGTGGTTCAAGCCTCAT
 
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rJMSF019F12+          GAGGCTTCTAATTTGAGGCAAAAACTGAAAAGCATACTTGCAAAGGAATTCAAAAGAGCC
rJMSF044D03+          GAGGCTTCTAATTTGAGGCAAAAACTGAAAAGCATACTTGCAAAGGAATTCAAAAGAGCC
                      ____________________________________________________________
consensus             GAGGCTTCTAATTTGAGGCAAAAACTGAAAAGCATACTTGCAAAGGAATTCAAAAGAGCC
 
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rJMSF019F12+          TCAAAGGAATTGAAAAATGGTAGTGATGATTTAACATGATATGAATCCTAGCCTTTGGCA
rJMSF044D03+          TCAAAGGAATTGAAAAATGGTAGTGATGATTTAACATGATATGAATCCTAGCCTTTGGCA
                      ____________________________________________________________
consensus             TCAAAGGAATTGAAAAATGGTAGTGATGATTTAACATGATATGAATCCTAGCCTTTGGCA
 
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rJMSF019F12+          TGACTAACAGGTTTTGACAACAATAGGTGACTTGTAGCTAGTATTCATTCACATATAAGT
rJMSF044D03+          TGACTAACAGGTTTTGACAACAATAGGTGACTTGTAGCTAGTATTCATTCACATATAAGT
                      ____________________________________________________________
consensus             TGACTAACAGGTTTTGACAACAATAGGTGACTTGTAGCTAGTATTCATTCACATATAAGT
 
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rJMSF019F12+          TGGAGAGTTTTGGAACAGCTCTGTATAGTCATTCCCTAAACTGCAGAGAATTGGAGTTTC
rJMSF044D03+          TGGAGAGTTTTGGAACAGCTCTGTATAGTCATTCCCTAAACTGCAGAGAATTGGAGTTTC
                      ____________________________________________________________
consensus             TGGAGAGTTTTGGAACAGCTCTGTATAGTCATTCCCTAAACTGCAGAGAATTGGAGTTTC
 
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rJMSF019F12+          TCCTTTGCCTCTCAATTCAGAATTGAAGGTAAATATATGAGAGATTTGAAGTAATAGTAA
rJMSF044D03+          TCCTTTGCCTCTCAATTCAGAATTGAAGGTAAATATATGAGAGATTTGAAGTAATAGTAA
                      ____________________________________________________________
consensus             TCCTTTGCCTCTCAATTCAGAATTGAAGGTAAATATATGAGAGATTTGAAGTAATAGTAA
 
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rJMSF019F12+          TAGTCATCAAAGATATGTTTCCTTTTAGTTGTATAGCAGACCAGATCAGATCATTCATTA
rJMSF044D03+          TAGTCATCAAAGATATGTTTCCTTTTAGTTGTATAGCAGACCAGATCAGATCATTCATTA
                      ____________________________________________________________
consensus             TAGTCATCAAAGATATGTTTCCTTTTAGTTGTATAGCAGACCAGATCAGATCATTCATTA
 
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rJMSF019F12+          TCACCCATACTGTAATTTTCTGGGGGGTTCTTGAGACCCTAGTTACGTTGCTATTTCTCA
rJMSF044D03+          TCACCCATACTGTAATTTTCTGGGGGGTTCTTGAGACCCTAGTTACGTTGCTATTTCTCA
                      ____________________________________________________________
consensus             TCACCCATACTGTAATTTTCTGGGGGGTTCTTGAGACCCTAGTTACGTTGCTATTTCTCA
 
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rJMSF019F12+          TATATATGATATGTAAATCCCTTTTTTGGGCAATCTATTGTAGTTGAG            
rJMSF044D03+          TATATATGATATGTAAATCCCTTTTTTGGGCAATCTATTGTAGTTGAGTACAAAAATGTG
                      ____________________________________________________________
consensus             TATATATGATATGTAAATCCCTTTTTTGGGCAATCTATTGTAGTTGAGTACAAAAATGTG