Contig 004372:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027P16Sequence526004372 (4)ref|XP_004231632.1|7e-67PREDICTED: probable acyl-activating enzyme 6 [Solanum lycopersicum]581002864 (3)gb|EYU25663.1|3e-68hypothetical protein MIMGU_mgv1a019009mg [Erythranthe guttata]
JMSF025J24Sequence508004372 (4)ref|XP_010250375.1|2e-50PREDICTED: probable acyl-activating enzyme 5, peroxisomal [Nelumbo nucifera]725002864 (3)emb|CBI24031.3|5e-106unnamed protein product [Vitis vinifera]
JMSF034B21Sequence631004372 (4)ref|XP_004231632.1|1e-68PREDICTED: probable acyl-activating enzyme 6 [Solanum lycopersicum]714002864 (3)emb|CBI24031.3|6e-117unnamed protein product [Vitis vinifera]
JMSF043I13Sequence794001007 (2)ref|XP_009626440.1|388PREDICTED: uncharacterized protein LOC104117142 [Nicotiana tomentosiformis]727004372 (4)ref|XP_004231632.1|1e-66PREDICTED: probable acyl-activating enzyme 6 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF027P16+                                                                    CGG
JMSF034B21+                                                  CCGTCGGAAACTCCTCGTCGG
rJMSF043I13+                                                                   CGG
                      ____________________________________________________________
consensus                                                    CCGTCGGAAACTCCTCGTCGG
 
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JMFF027P16+           TTATCAGAACCAGCGCCGGGCGCGGCGATTCCGCCGGAAACATGGACAGAGCCTCCATCA
JMSF034B21+           TTATCAGAACCAGCGCCGGGCGCGGCGATTCCGCCGGAAACATGGACAGAGCCTCCATCA
rJMSF043I13+          TTATCAGAACCAGCGCCGGGCGCGGCGATTCCGCCGGAAACATGGACAGAGCCTCCATCA
                      ____________________________________________________________
consensus             TTATCAGAACCAGCGCCGGGCGCGGCGATTCCGCCGGAAACATGGACAGAGCCTCCATCA
 
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JMFF027P16+           GCACATCCTTCGACAAGCAGTCAACGAAGATCACCTTCGACTCGCAGTGGCGGAGCATAA
JMSF025J24+                                                     CGCAGTGGCGGAGCATAA
JMSF034B21+           GCACATCCTTCGACAAGCAGTCAACGAAGATCACCTTCGACTCGCAGTGGCGGAGCATAA
rJMSF043I13+          GCACATCCTTCGACAAGCAGTCAACGAAGATCACCTTCGACTCGCAGTGGCGGAGCATAA
                      ____________________________________________________________
consensus             GCACATCCTTCGACAAGCAGTCAACGAAGATCACCTTCGACTCGCAGTGGCGGAGCATAA
 
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JMFF027P16+           TCGACACCGTGCGAGCATCCAGCCGGAGATTGATGGAGTTGAGCACGGCTCCCGCCATGG
JMSF025J24+           TNGACACCGTGCGAGCATCCAGCCGGAGATTGATGGAGTTGAGCNCGGCTCCCGCCATGG
JMSF034B21+           TCGACACCGTGCGAGCATCCAGCCGGAGATTGATGGAGTTGAGCACGGCTCCCGCCATGG
rJMSF043I13+          TCGACACCGTGCGAGCATCCAGCCGGAGATTGATGGAGTTGAGCACGGCTCCCGCCATGG
                      ____________________________________________________________
consensus             TCGACACCGTGCGAGCATCCAGCCGGAGATTGATGGAGTTGAGCACGGCTCCCGCCATGG
 
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JMFF027P16+           GCACGGCGAAGTTCATCTCGTACATGGCCGGAATATTGGGCGCCATCACAGACACCACCT
JMSF025J24+           GCACGGCGAAGTTCATCTCGTACATGGCCGGAATATTGGGCGCCATCACAGACACCACCT
JMSF034B21+           GCACGGCGAAGTTCATCTCGTACATGGCCGGAATATTGGGCGCCATCACAGACACCACCT
rJMSF043I13+          GCACGGCGAAGTTCATCTCGTACATGGCCGGAATATTGGGCGCCATCACAGACACCACCT
                      ____________________________________________________________
consensus             GCACGGCGAAGTTCATCTCGTACATGGCCGGAATATTGGGCGCCATCACAGACACCACCT
 
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JMFF027P16+           GCCCTCTCTCAACCCCAAGGCCCACAATCGCCGACGCCAGACGGAGGCAACGCCGGTGGG
JMSF025J24+           GCCCTCTCTCAACCCCAAGGCCCACAATCGCCGACGCCAGACGGAGGCAACGCCGGTGGG
JMSF034B21+           ACCCTCTCTCAACCCCAAGGCCCACAATCGCCGACGCCAGACGGAGGCAACGCCGGTGGG
rJMSF043I13+          GCCCTCTCTCAACCCCAAGGCCCACAATCGCCGACGCCAGGCGGAGGCAACGCCGGTGGG
                      ____________________________________________________________
consensus             GCCCTCTCTCAACCCCAAGGCCCACAATCGCCGACGCCAGACGGAGGCAACGCCGGTGGG
 
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JMFF027P16+           TCTCCGACCACGTATACGCCGTGCCGTTGTAGACGACGGAAGTACAGTCGCCGTAGATGG
JMSF025J24+           TCTCCGACCANGTATACGCCGTGCCGTTGTAGACGACGGAAGTACAGTCGCCGTAGATGG
JMSF034B21+           TCTCCGACCACGTATACGCCGTGCCGTTGTAGACGACGGAAGTACAGTCGCCGTAGATGG
rJMSF043I13+          TCTCCGACCACGTATACGCCGTGCCGTTGTAGACGACGGAAGTACAGTCGCCGTAGATGG
                      ____________________________________________________________
consensus             TCTCCGACCACGTATACGCCGTGCCGTTGTAGACGACGGAAGTACAGTCGCCGTAGATGG
 
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JMFF027P16+           TGGCCGTTCTCTCCAAGAAGTTCAGTGGTGTCAGCGGGCAAGAATTCGCCGGACTTAGCT
JMSF025J24+           TGGCCGTTCTCTCCAAGAAGTTCAGTGGTGTCAGCGGGCAAGAATTCGCCGGACTTAGCT
JMSF034B21+           TGGCCGTTCTCTCCAAGAAGTTCAGTGGTGTCAGCGGGCAAGAATTCGCCGGACTTAGCT
rJMSF043I13+          TGGCCGTTCTCTCCAAGAAGTTCAGTGGTGTCAGCGGGCAAGAATTCGCCGGACTTAGCT
                      ____________________________________________________________
consensus             TGGCCGTTCTCTCCAAGAAGTTCAGTGGTGTCAGCGGGCAAGAATTCGCCGGACTTAGCT
 
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JMFF027P16+           TCAGTTGATCCATTGCAACCGCTTTTTGGATTCACAGTCAGCTCAAAACTGCTTTAAATC
JMSF025J24+           TCAGTTGATCCATTGCAACCGCTTTTNGGATTCACAGTCAGCTCAAAACTGCTTTAAATC
JMSF034B21+           TCAGTTGATCCATTGCAACCGCTTTTTGGATTCACAGTCAGCTCAAAACTGCTTTAAATC
rJMSF043I13+          TCAGTTGATCCATTGCAACCGCTTTTTGGATTCACAGTCAGCTCAAAACTGCTTTAAATC
                      ____________________________________________________________
consensus             TCAGTTGATCCATTGCAACCGCTTTTTGGATTCACAGTCAGCTCAAAACTGCTTTAAATC
 
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JMFF027P16+           TGTAAAAAGATTATGATCGACGGAGAAGATCAAGAGGAAAGGT                 
JMSF025J24+           TGTAAAAAGATTATGATCGACGGAGAAGATCAAGAGGAAAGGTATTACAATNTAACACGT
JMSF034B21+           TGTAAAAAGATTATGATCGACGGAGAAGATCAAGAGGAAAGGTATTACAATCTAACACGT
rJMSF043I13+          TGTAAAAAGATTATGATCGACGGAGAAGATCAAGAGGAAAGGTATTACAATCTAACACGT
                      ____________________________________________________________
consensus             TGTAAAAAGATTATGATCGACGGAGAAGATCAAGAGGAAAGGTATTACAATCTAACACGT
 
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JMSF025J24+           ATGATCTTTCATATAATATTTCAATTCGTCCTTATCCCAATTGCGAATAAGGACATGCGT
JMSF034B21+           ATGATCTTTCATATAATATTTCAATTCGTCCTTATCCCAATTGCGAATAAGGACATGCGT
rJMSF043I13+          ATGATCTTTCATATAATATTTCAATTCGTCCTTATCCCAATTGCGAATAAGGACATGCGT
                      ____________________________________________________________
consensus             ATGATCTTTCATATAATATTTCAATTCGTCCTTATCCCAATTGCGAATAAGGACATGCGT
 
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JMSF025J24+           TCAGTGT                                                     
JMSF034B21+           TCAGTGT                                                     
rJMSF043I13+          TCAGTGTTTGGTTATTATTTGTTCATTTCCTCTCCTTAAATATGGCAGGATCAGAATATC
                      ____________________________________________________________
consensus             TCAGTGTTTGGTTATTATTTGTTCATTTCCTCTCCTTAAATATGGCAGGATCAGAATATC
 
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rJMSF043I13+          TACTACATACCATTACTGTAGTTTTCTTTTTTAAATTTAGAAAAATTTTCTACTCAACAT
                      ____________________________________________________________
consensus             TACTACATACCATTACTGTAGTTTTCTTTTTTAAATTTAGAAAAATTTTCTACTCAACAT