Contig 004369:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043B19Sequence714004369 (2)ref|XP_009767862.1|7e-53PREDICTED: uncharacterized protein LOC104218938 isoform X1 [Nicotiana sylvestri788004369 (2)ref|XP_006349482.1|5e-105PREDICTED: uncharacterized protein LOC102592462 isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-                                                      GATCAACAATTCTTCGC
                      ____________________________________________________________
consensus                                                        GATCAACAATTCTTCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           AGTTATAGTTTTCCTGGTCAGAGGGATAACGGACTCCGTACTCGGATCTTCCAAAATCCA
                      ____________________________________________________________
consensus             AGTTATAGTTTTCCTGGTCAGAGGGATAACGGACTCCGTACTCGGATCTTCCAAAATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           TACACGGTTAATGAGTTGAGGTTCAATGGAGATTTCGAATTCCTCTGCATTATTTTTGAC
                      ____________________________________________________________
consensus             TACACGGTTAATGAGTTGAGGTTCAATGGAGATTTCGAATTCCTCTGCATTATTTTTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           TCCTCGAATCAGTCGAATTCAGCTCTTCTACCGAGGAAGCAATTTTAATGTCCGAAATCA
rJMSF043B19+                                                              CGAAATCA
                      ____________________________________________________________
consensus             TCCTCGAATCAGTCGAATTCAGCTCTTCTACCGAGGAAGCAATTTTAATGTCCGAAATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           CATGACTCTCTCTGG-TTCGGTCAATCGTATTCAGACAATGCATTGTTTTCCTTCAGATT
rJMSF043B19+          CATGACTCTCTCTGGNTTCGGTCAATCGTATTCAGACAATGCATTGTTTTCCTTCAGATT
                      ____________________________________________________________
consensus             CATGACTCTCTCTGGNTTCGGTCAATCGTATTCAGACAATGCATTGTTTTCCTTCAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           TACAGAAGCAGTGCAATGCAAATTTTCCTGGAAAATTGGAGAATAGGCCAATGTCTTTGC
rJMSF043B19+          TACAGAAGCAGTGCAATGCAAATTTTCCTGGAAAATTGGAGAATAGGCCAATGTCTTTGC
                      ____________________________________________________________
consensus             TACAGAAGCAGTGCAATGCAAATTTTCCTGGAAAATTGGAGAATAGGCCAATGTCTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           CTGCACATGGAATCATAAAATCTTCTAGGCATGCTTCCCATTCATATTTTTTAAGGCCAT
rJMSF043B19+          CTGCACATGGAATCATAAAATCTTCTAGGCATGCTTCCCATTCATATTTTTTAAGGCCAT
                      ____________________________________________________________
consensus             CTGCACATGGAATCATAAAATCTTCTAGGCATGCTTCCCATTCATATTTTTTAAGGCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           GCCAAGTTAAAAGCGAGGACTCAGAAGGAACATTGAGTGGGGAAAGCATCTTACTAAATG
rJMSF043B19+          GCCAAGTTAAAAGCGAGGACTCAGAAGGAACATTGAGTGGGGAAAGCATCTTACTAAATG
                      ____________________________________________________________
consensus             GCCAAGTTAAAAGCGAGGACTCAGAAGGAACATTGAGTGGGGAAAGCATCTTACTAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           AGCAGAGCTTGGAGCAGGAACTACAGCTTGCCATTCAAGAGGAGAATTATTCCCAAGCAG
rJMSF043B19+          AGCAGAGCTTGGAGCAGGAACTACAGCTTGCCATTCAAGAGGAGAATTATTCCCAAGCAG
                      ____________________________________________________________
consensus             AGCAGAGCTTGGAGCAGGAACTACAGCTTGCCATTCAAGAGGAGAATTATTCCCAAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           CAAAGATCAGGGATAGCCTTCGACTTCTCCACGAGGACACCAAGGCATCAGTTTTAGCAG
rJMSF043B19+          CAAAGATCAGGGATAGCCTTCGACTTCTCCACGAGGACACCAAGGCATCAGTTTTAGCAG
                      ____________________________________________________________
consensus             CAAAGATCAGGGATAGCCTTCGACTTCTCCACGAGGACACCAAGGCATCAGTTTTAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           CAAATGCTCGATTTTATAATTCGTTTAGAAGTGGAGATTTGGCTGCTATGCAAGCTCTCT
rJMSF043B19+          CAAATGCTCGATTTTATAATTCGTTTAGAAGTGGAGATTTGGCTGCTATGCAAGCTCTCT
                      ____________________________________________________________
consensus             CAAATGCTCGATTTTATAATTCGTTTAGAAGTGGAGATTTGGCTGCTATGCAAGCTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           GGGCCAAGGGTGATAACGCGTGTGTTGTGCACCCTGGAGTAAGTGGCATATCCGGCTATG
rJMSF043B19+          GGGCCAAGGGTGATAACGCGTGTGTTGTGCACCCTGGAGTAAGTGGCATATCCGGCTATG
                      ____________________________________________________________
consensus             GGGCCAAGGGTGATAACGCGTGTGTTGTGCACCCTGGAGTAAGTGGCATATCCGGCTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043B19-           ATCTTGTGATGGGAAGCTGGG                                       
rJMSF043B19+          ATCTTGTGATGGGAAGCTGGGAGTTTGTGTGGGCAGACTATGAATTCCCCTTAGAAATTG
                      ____________________________________________________________
consensus             ATCTTGTGATGGGAAGCTGGGAGTTTGTGTGGGCAGACTATGAATTCCCCTTAGAAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043B19+          AGATCAAGGATGTCCAAGTTCACGTTAGAGGCGACTTGGGATATGTTACTTGCATAGAAA
                      ____________________________________________________________
consensus             AGATCAAGGATGTCCAAGTTCACGTTAGAGGCGACTTGGGATATGTTACTTGCATAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043B19+          TGGTGAAGACAAAGGGCAGCAGCTGGGGAAAACAGTTCGCCACTAATGTTTTTGAGAAGA
                      ____________________________________________________________
consensus             TGGTGAAGACAAAGGGCAGCAGCTGGGGAAAACAGTTCGCCACTAATGTTTTTGAGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043B19+          TTGATGGTCAGTGGTATATATGCGTTCACCATGCATCATATATCGACTTGTAAAAATCAT
                      ____________________________________________________________
consensus             TTGATGGTCAGTGGTATATATGCGTTCACCATGCATCATATATCGACTTGTAAAAATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043B19+          GGAAACTTGAAATTGCTAAAACTAGCTTGGAATTTTGAAATTTTGTATTCTATGCAGTAG
                      ____________________________________________________________
consensus             GGAAACTTGAAATTGCTAAAACTAGCTTGGAATTTTGAAATTTTGTATTCTATGCAGTAG