Contig 004364:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007N07Sequence247006671 (2)ref|XP_010113127.1|4e-05Alpha-L-fucosidase 1 [Morus notabilis] gb|EXC66584.1| Alpha-L-fucosidase 1 [Moru794004364 (2)ref|XP_002318264.2|3e-120hypothetical protein POPTR_0012s14150g [Populus trichocarpa] gb|EEE96484.2| hypo
JMSF042H05Sequence778006671 (2)ref|XP_009613727.1|1e-89PREDICTED: alpha-L-fucosidase 1-like [Nicotiana tomentosiformis]810004364 (2)ref|XP_002318264.2|3e-121hypothetical protein POPTR_0012s14150g [Populus trichocarpa] gb|EEE96484.2| hypo

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007N07+ TTTCAATTGNCAATGGCAGCTTAATTAATT
rJMSF042H05+ TTTCAATTGGCAATGGCAGCTTAATTAATT
                      ____________________________________________________________
consensus TTTCAATTGGCAATGGCAGCTTAATTAATT
 
. : . : . : . : . : . :
rJMSF007N07+ ATCTTAACACCGGAGACTCGAAAGGGACGGATTGGCTACCGTCGGAATGTGACGTCTCAA
rJMSF042H05+ ATCTTAACACCGGAGACTCGAAAGGGACGGATTGGCTACCGTCGGAATGTGACGTCTCAA
                      ____________________________________________________________
consensus ATCTTAACACCGGAGACTCGAAAGGGACGGATTGGCTACCGTCGGAATGTGACGTCTCAA
 
. : . : . : . : . : . :
rJMSF007N07+ TCCGAAAGGGATGGTTTTGGCATAAATCACAAGCACCAAAGACGCTTACAGAGTTACTTG
rJMSF042H05+ TCCGAAAGGGATGGTTTTGGCATAAATCACAAGCACCAAAGACGCTTACAGAGTTACTTG
                      ____________________________________________________________
consensus TCCGAAAGGGATGGTTTTGGCATAAATCACAAGCACCAAAGACGCTTACAGAGTTACTTG
 
. : . : . : . : . : . :
rJMSF007N07+ AAATTTACTACAATTCAGTGGGACGGAATTGCCTGTTACTGCTAAACGTACCGCCTAATA
rJMSF042H05+ AAATTTACTACAATTCAGTGGGACGGAATTGCCTGTTACTGCTAAACGTACCGCCTAATA
                      ____________________________________________________________
consensus AAATTTACTACAATTCAGTGGGACGGAATTGCCTGTTACTGCTAAACGTACCGCCTAATA
 
. : . : . : . : . : . :
rJMSF007N07+ CAAAAGGATTGATATCAGATAGTGACGTGATGAGATTAAAGGAGTTTAGAGGTGCCATTG
rJMSF042H05+ CAAAAGGATTGATATCAGATAGTGACGTGATGAGATTAAAGGAGTTTAGAGGTGCCATTG
                      ____________________________________________________________
consensus CAAAAGGATTGATATCAGATAGTGACGTGATGAGATTAAAGGAGTTTAGAGGTGCCATTG
 
. : . : . : . : . : . :
rJMSF007N07+ AGACAATATTCTCATCAAATTTGGCTGAAAATTGTTCAATAAAAGTAAGTAGCCAAAGGG
rJMSF042H05+ AGACAATATTCTCATCAAATTTGGCTGAAAATTGTTCAATAAAAGTAAGTAGCCAAAGGG
                      ____________________________________________________________
consensus AGACAATATTCTCATCAAATTTGGCTGAAAATTGTTCAATAAAAGTAAGTAGCCAAAGGG
 
. : . : . : . : . : . :
rJMSF007N07+ GAGGTGGGTTTGGACCTGAAAATATGATAGATGGTGATCATTTATGGACTTACTGGGCAC
rJMSF042H05+ GAGGTGGGTTTGGACCTGAAAATATGATAGATGGTGATCATTTATGGACTTACTGGGCAC
                      ____________________________________________________________
consensus GAGGTGGGTTTGGACCTGAAAATATGATAGATGGTGATCATTTATGGACTTACTGGGCAC
 
. : . : . : . : . : . :
rJMSF007N07+ CCATGGATGAATACACGGGACACCATTGGATCAAACTGACGGCGTTTAAAGAAAAACTGA
rJMSF042H05+ CCATGGATGAATACACGGGACACCATTGGATCAAACTGACGGCGTTTAAAGAAAAACTGA
                      ____________________________________________________________
consensus CCATGGATGAATACACGGGACACCATTGGATCAAACTGACGGCGTTTAAAGAAAAACTGA
 
. : . : . : . : . : . :
rJMSF007N07+ AATTCAACGTGGTACGTATTCAAGAAGCAATCGGATTAGGACAGAGAATAAAACGCCACC
rJMSF042H05+ AATTCAACGTGGTACGTATTCAAGAAGCAATCGGATTAGGACAGAGAATAAAACGCCACC
                      ____________________________________________________________
consensus AATTCAACGTGGTACGTATTCAAGAAGCAATCGGATTAGGACAGAGAATAAAACGCCACC
 
. : . : . : . : . : . :
rJMSF007N07+ AAGTTTACGTGGACGGAGTTAAGGTTGCAGACGGCACCACCGTGGGGTACAAAAAGCTTC
rJMSF042H05+ AAGTTTACGTGGACGGAGTTAAGGTTGCAGACGGCACCACCGTGGGGTACAAAAAGCTTC
                      ____________________________________________________________
consensus AAGTTTACGTGGACGGAGTTAAGGTTGCAGACGGCACCACCGTGGGGTACAAAAAGCTTC
 
. : . : . : . : . : . :
rJMSF007N07+ ATAGGCTTGAAAAGGGAGTGGTGGAAGGGTACAGTGTGAAGATCAAAATAATTGGGTCAC
rJMSF042H05+ ATAGGCTTGAAAAGGGAGTGGTGGAAGGGTACAGTGTGAAGATCAAAATAATTGGGTCAC
                      ____________________________________________________________
consensus ATAGGCTTGAAAAGGGAGTGGTGGAAGGGTACAGTGTGAAGATCAAAATAATTGGGTCAC
 
. : . : . : . : . : . :
rJMSF007N07+ GGGCGTCACCTTTAATCTCTTCAATAGGTCTCCATTTTGATCCCTTTTGGCACCCATATT
rJMSF042H05+ GGGCGTCACCTTTAATCTCTTCAATAGGTCTCCATTTTGATCCCTTTTGGCACCCATATT
                      ____________________________________________________________
consensus GGGCGTCACCTTTAATCTCTTCAATAGGTCTCCATTTTGATCCCTTTTGGCACCCATATT
 
. : . : . : . : . : . :
rJMSF007N07+ CATAGTGAGCTAGCAGTGTCTAACGTTTTCTGCACATCTCTTTCTTCCTGTTTTGTCTCT
rJMSF042H05+ CATAGTGAGCTAGCAGTGTCTAACGTTTTCTGCACATCTCTTTCTTCCTGTTTTGTCTCT
                      ____________________________________________________________
consensus CATAGTGAGCTAGCAGTGTCTAACGTTTTCTGCACATCTCTTTCTTCCTGTTTTGTCTCT
 
. : . : . : . : . : . :
rJMSF007N07+ GTGTTCCCGAAAATTGATATTTCAATAA
rJMSF042H05+ GTGTTCCCGAAAATTGATATGTCAATAAACAGCGACAAAAAGGCTAGCATGCCACAAAAG
                      ____________________________________________________________
consensus GTGTTCCCGAAAATTGATATTTCAATAAACAGCGACAAAAAGGCTAGCATGCCACAAAAG