clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF025M16 | Sequence | 680 | 002483 (10) | ref|XP_009798582.1| | 1e-27 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | 687 | 004358 (5) | ref|XP_004231883.1| | 4e-70 | PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan |
JMSF041L11 | Sequence | 802 | 002483 (10) | gb|AHW50672.1| | 3e-66 | cadmium/zinc-transporting ATPase HMA1 [Nicotiana tabacum] | 637 | 004358 (5) | ref|XP_002278549.1| | 7e-22 | PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic isofor |
JMSF051J11 | Sequence | 692 | 002483 (10) | ref|XP_009798582.1| | 1e-17 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | 721 | 004358 (5) | ref|XP_004231883.1| | 5e-53 | PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan |
JMSF051N03 | Sequence | 682 | 002483 (10) | ref|XP_009798582.1| | 6e-15 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | 735 | 004358 (5) | ref|XP_004231883.1| | 4e-57 | PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan |
JMSF052J02 | Sequence | 671 | 002483 (10) | ref|XP_009798582.1| | 8e-39 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | 458 | 004358 (5) |
This contig is upended
. : . : . : . : . : . :
rJMSF025M16+ TGACCATGA
____________________________________________________________
consensus TGACCATGA
. : . : . : . : . : . :
rJMSF025M16+ GGCAAGTGCATTGAGAGTTGCAAAAGCTGTGGGTATCAAAGAAGTTCACTGCAGCCTTAA
____________________________________________________________
consensus GGCAAGTGCATTGAGAGTTGCAAAAGCTGTGGGTATCAAAGAAGTTCACTGCAGCCTTAA
. : . : . : . : . : . :
rJMSF025M16+ GCCTGAAGACAAGCTGTATCATGTGACAAGCATTTCAAGGGATAAAGGGGGGCTTATAAT
rJMSF051N03+ GAAGACAAGCTGTATCATGTGACAAGCATTTCAAGGGATNAAGGGGGGCTTATAAT
rJMSF051J11+ TATCATGTGACAAGCATTTCAAGGGATAAAGGGGGGCTTATAAT
____________________________________________________________
consensus GCCTGAAGACAAGCTGTATCATGTGACAAGCATTTCAAGGGATAAAGGGGGGCTTATAAT
. : . : . : . : . : . :
rJMSF025M16+ GGTTGGTGATGGCATCAATGATGCCCCTGCACTTGCTGCTGCTACTGTAGGCATAGTACT
rJMSF051N03+ GGTTGGTGATGGCATCAATGATGCCCCTGCACTTGCTGCTGCTACTGTAGGCATAGTACT
rJMSF051J11+ GGTTGGTGATGGCATCAATGATGCCCCTGCACTTGCTGCTGCTACTGTAGGCATAGTACT
____________________________________________________________
consensus GGTTGGTGATGGCATCAATGATGCCCCTGCACTTGCTGCTGCTACTGTAGGCATAGTACT
. : . : . : . : . : . :
rJMSF025M16+ AGCTGAACGTGCGAGTGCAGCTGCTATAGCTGTTGCAGACATCCTACTGCTGCAAGACAA
rJMSF051N03+ AGCTGAACGTGCGAGTGCAGCTGCTATAGCTGTTGCAGACATCCTACTGCTGCAAGACAA
rJMSF051J11+ AGCTGAACGTGCGAGTGCAGCTGCTATAGCTGTTGCAGACATCCTACTGCTGCAAGACAA
____________________________________________________________
consensus AGCTGAACGTGCGAGTGCAGCTGCTATAGCTGTTGCAGACATCCTACTGCTGCAAGACAA
. : . : . : . : . : . :
rJMSF025M16+ TATTTCTGGTGTCCCATTCTGTGTAGCCAAAGCTCGACAAACGACATCACTGATCAAACA
rJMSF051N03+ TATTTCTGGTGTCCCATTCTGTGTAGCCAAAGCTCGACAAACGACATCACTGATCAAACA
rJMSF051J11+ TATTTCTGGTGTCCCATTCTGTGTAGCCAAAGCTCGACAAACGACATCACTGATCAAACA
____________________________________________________________
consensus TATTTCTGGTGTCCCATTCTGTGTAGCCAAAGCTCGACAAACGACATCACTGATCAAACA
. : . : . : . : . : . :
rJMSF025M16+ AAATGTGGCTCTTGCCTTGTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
rJMSF051N03+ AAATGTGGCTCTTGCCTTGTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
rJMSF051J11+ AAATGTGGCTCTTGCCTTGTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
rJMSF041L11+ GTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
____________________________________________________________
consensus AAATGTGGCTCTTGCCTTGTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
. : . : . : . : . : . :
rJMSF025M16+ TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
rJMSF051N03+ TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
rJMSF051J11+ TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
rJMSF041L11+ TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
____________________________________________________________
consensus TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
. : . : . : . : . : . :
rJMSF025M16+ CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACAGTATCATACAACTCGT
rJMSF051N03+ CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACAGTATCATACAACTCGT
rJMSF051J11+ CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACAGTATCATACAACTCGT
rJMSF041L11+ CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACNGTATCATACAACTCGT
____________________________________________________________
consensus CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACAGTATCATACAACTCGT
. : . : . : . : . : . :
rJMSF025M16+ GAACAGATTAAGATCAGTAATCATGGTTCTAAGGAGGCATGGCAACAACAGCCAAAGCAC
rJMSF051N03+ GAACAGATTAAGATCAGTAATCATGGTTCTAAGGAGGCATGGCAACAACAGCCAAAGCAC
rJMSF051J11+ GAACAGATTAAGATCAGTAATCATGGTTCTAAGGAGGCATGGCAACAACAGCCAAAGCAC
rJMSF041L11+ GAACAGATTAAGATCNGTAATCATGGTTNTAAGGAGGCATGGCAACAACAGCCAAAGCNC
____________________________________________________________
consensus GAACAGATTAAGATCAGTAATCATGGTTCTAAGGAGGCATGGCAACAACAGCCAAAGCAC
. : . : . : . : . : . :
rJMSF025M16+ AATTGAAGCAGCAGCACCTTTATGATTATTCTTGGGCTCGAATTTGACAGCAGAGGGGAG
rJMSF051N03+ AATTGAAGCAGCAGCACCTTTATGATTATTCTTGGGCTCGAATTTGACAGCAGAGGGGAG
rJMSF051J11+ AATTGAAGCAGCAGCACCTTTATGATTATTCTTGGGCTCGAATTTGACAGCAGAGGGGAG
rJMSF052J02+ CCTTTATGATTATTTTTGGGCTNGAATTTGACNGCNGAGGGGNG
rJMSF041L11+ AATTGAAGCAGCAGCACCTTTATGATTATTNTTGGGCTCGAATTTGACAGCAGAGGGGAG
____________________________________________________________
consensus AATTGAAGCAGCAGCACCTTTATGATTATTCTTGGGCTCGAATTTGACAGCAGAGGGGAG
. : . : . : . : . : . :
rJMSF025M16+ AGTCGATTCAACCCAGGCCTCAACG
rJMSF051N03+ AGTCGATTCAACCCAGGCCTCAACG
rJMSF051J11+ AGTCGATTCAACCCAGGCCTCAACG
rJMSF052J02+ AGTNGNTTCNACCCNGGCCTCAACGCATCATCCCTAGGTCGTTGTGAGTTTTGACCCGGN
rJMSF041L11+ AGTCGATTCAACCCAGGCCTCAACGCATCATCCCTAGGTCGTTGTGAGTTTTGACNCGGA
____________________________________________________________
consensus AGTCGATTCAACCCAGGCCTCAACGCATCATCCCTAGGTCGTTGTGAGTTTTGACCCGGA
. : . : . : . : . : . :
rJMSF052J02+ ACTGCCNATNAAAACNAACNTCNAGNATNTTNTTNTTNNGAATTNGNGTGTTAGCNGGAT
rJMSF041L11+ ACTGCCAATAAAAACAAACATCAAGAATATTATTATTCAGAATTAGTGTGTTAGCAGGAT
____________________________________________________________
consensus ACTGCCAATAAAAACAAACATCAAGAATATTATTATTCAGAATTAGTGTGTTAGCAGGAT
. : . : . : . : . : . :
rJMSF052J02+ GTTGCNATGAACGGTTCAACGTTCATAGGGAGNTNATNCGTTACNTCNAAAGNCCCGNGG
rJMSF041L11+ GTTGCAATGAACGGTTCAACGTTCATAGGGAGTTAATACGTTACATCAAAAGACNCGAGG
____________________________________________________________
consensus GTTGCAATGAACGGTTCAACGTTCATAGGGAGTTAATACGTTACATCAAAAGACCCGAGG
. : . : . : . : . : . :
rJMSF052J02+ NCNAGAAGCCCGGNTAAGCNTNGNTTAGGTGGTAGNGGTCATNGGNAACTCGTGTAGCNT
rJMSF041L11+ ACAAGAAGCCNGGATAAGCATCG-----GTGGTAGTGGTCATAGGAAACTCGTGTAGCAT
____________________________________________________________
consensus ACAAGAAGCCCGGATAAGCATCGNTTAGGTGGTAGTGGTCATAGGAAACTCGTGTAGCAT
. : . : . : . : . : . :
rJMSF052J02+ TTTCAAATGTACCCGATTTAAAACCTACCCCCCNAAGCTTTGTTTTACTCCNATGTCGNT
rJMSF041L11+ TTTCAAATGTACCCGATTTAAAACCTACCCNCCAAAGCTTTGTTTTACTCCAATGTCGTT
____________________________________________________________
consensus TTTCAAATGTACCCGATTTAAAACCTACCCCCCAAAGCTTTGTTTTACTCCAATGTCGTT
. : . : . : . : . : . :
rJMSF052J02+ TNTGAATATAAAGNTAAAACNATCAATTTTT
rJMSF041L11+ TCTGAATATAAAGTTAAAACAATCAATTTTTAGCAACAATTCTTGTAAAAAGAAACAACA
____________________________________________________________
consensus TCTGAATATAAAGTTAAAACAATCAATTTTTAGCAACAATTCTTGTAAAAAGAAACAACA