Contig 004358:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025M16Sequence680002483 (10)ref|XP_009798582.1|1e-27PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1,687004358 (5)ref|XP_004231883.1|4e-70PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan
JMSF041L11Sequence802002483 (10)gb|AHW50672.1|3e-66cadmium/zinc-transporting ATPase HMA1 [Nicotiana tabacum]637004358 (5)ref|XP_002278549.1|7e-22PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic isofor
JMSF051J11Sequence692002483 (10)ref|XP_009798582.1|1e-17PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1,721004358 (5)ref|XP_004231883.1|5e-53PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan
JMSF051N03Sequence682002483 (10)ref|XP_009798582.1|6e-15PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1,735004358 (5)ref|XP_004231883.1|4e-57PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan
JMSF052J02Sequence671002483 (10)ref|XP_009798582.1|8e-39PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1,458004358 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF025M16+ TGACCATGA
                      ____________________________________________________________
consensus TGACCATGA
 
. : . : . : . : . : . :
rJMSF025M16+ GGCAAGTGCATTGAGAGTTGCAAAAGCTGTGGGTATCAAAGAAGTTCACTGCAGCCTTAA
                      ____________________________________________________________
consensus GGCAAGTGCATTGAGAGTTGCAAAAGCTGTGGGTATCAAAGAAGTTCACTGCAGCCTTAA
 
. : . : . : . : . : . :
rJMSF025M16+ GCCTGAAGACAAGCTGTATCATGTGACAAGCATTTCAAGGGATAAAGGGGGGCTTATAAT
rJMSF051N03+ GAAGACAAGCTGTATCATGTGACAAGCATTTCAAGGGATNAAGGGGGGCTTATAAT
rJMSF051J11+ TATCATGTGACAAGCATTTCAAGGGATAAAGGGGGGCTTATAAT
                      ____________________________________________________________
consensus GCCTGAAGACAAGCTGTATCATGTGACAAGCATTTCAAGGGATAAAGGGGGGCTTATAAT
 
. : . : . : . : . : . :
rJMSF025M16+ GGTTGGTGATGGCATCAATGATGCCCCTGCACTTGCTGCTGCTACTGTAGGCATAGTACT
rJMSF051N03+ GGTTGGTGATGGCATCAATGATGCCCCTGCACTTGCTGCTGCTACTGTAGGCATAGTACT
rJMSF051J11+ GGTTGGTGATGGCATCAATGATGCCCCTGCACTTGCTGCTGCTACTGTAGGCATAGTACT
                      ____________________________________________________________
consensus GGTTGGTGATGGCATCAATGATGCCCCTGCACTTGCTGCTGCTACTGTAGGCATAGTACT
 
. : . : . : . : . : . :
rJMSF025M16+ AGCTGAACGTGCGAGTGCAGCTGCTATAGCTGTTGCAGACATCCTACTGCTGCAAGACAA
rJMSF051N03+ AGCTGAACGTGCGAGTGCAGCTGCTATAGCTGTTGCAGACATCCTACTGCTGCAAGACAA
rJMSF051J11+ AGCTGAACGTGCGAGTGCAGCTGCTATAGCTGTTGCAGACATCCTACTGCTGCAAGACAA
                      ____________________________________________________________
consensus AGCTGAACGTGCGAGTGCAGCTGCTATAGCTGTTGCAGACATCCTACTGCTGCAAGACAA
 
. : . : . : . : . : . :
rJMSF025M16+ TATTTCTGGTGTCCCATTCTGTGTAGCCAAAGCTCGACAAACGACATCACTGATCAAACA
rJMSF051N03+ TATTTCTGGTGTCCCATTCTGTGTAGCCAAAGCTCGACAAACGACATCACTGATCAAACA
rJMSF051J11+ TATTTCTGGTGTCCCATTCTGTGTAGCCAAAGCTCGACAAACGACATCACTGATCAAACA
                      ____________________________________________________________
consensus TATTTCTGGTGTCCCATTCTGTGTAGCCAAAGCTCGACAAACGACATCACTGATCAAACA
 
. : . : . : . : . : . :
rJMSF025M16+ AAATGTGGCTCTTGCCTTGTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
rJMSF051N03+ AAATGTGGCTCTTGCCTTGTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
rJMSF051J11+ AAATGTGGCTCTTGCCTTGTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
rJMSF041L11+ GTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
                      ____________________________________________________________
consensus AAATGTGGCTCTTGCCTTGTCTAGCATTGCTGTTGCCTCTCTTACATCAGTTTTGGGATT
 
. : . : . : . : . : . :
rJMSF025M16+ TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
rJMSF051N03+ TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
rJMSF051J11+ TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
rJMSF041L11+ TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
                      ____________________________________________________________
consensus TCTCCCCCTATGGTTAACAGTGCTTTTACACGAAGGAGGCACGCTTCTTGTCTGTTTGAA
 
. : . : . : . : . : . :
rJMSF025M16+ CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACAGTATCATACAACTCGT
rJMSF051N03+ CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACAGTATCATACAACTCGT
rJMSF051J11+ CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACAGTATCATACAACTCGT
rJMSF041L11+ CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACNGTATCATACAACTCGT
                      ____________________________________________________________
consensus CTCCATTCGGGCTCTCAACGACCCCACAGGATCCTGGCAGGACAGTATCATACAACTCGT
 
. : . : . : . : . : . :
rJMSF025M16+ GAACAGATTAAGATCAGTAATCATGGTTCTAAGGAGGCATGGCAACAACAGCCAAAGCAC
rJMSF051N03+ GAACAGATTAAGATCAGTAATCATGGTTCTAAGGAGGCATGGCAACAACAGCCAAAGCAC
rJMSF051J11+ GAACAGATTAAGATCAGTAATCATGGTTCTAAGGAGGCATGGCAACAACAGCCAAAGCAC
rJMSF041L11+ GAACAGATTAAGATCNGTAATCATGGTTNTAAGGAGGCATGGCAACAACAGCCAAAGCNC
                      ____________________________________________________________
consensus GAACAGATTAAGATCAGTAATCATGGTTCTAAGGAGGCATGGCAACAACAGCCAAAGCAC
 
. : . : . : . : . : . :
rJMSF025M16+ AATTGAAGCAGCAGCACCTTTATGATTATTCTTGGGCTCGAATTTGACAGCAGAGGGGAG
rJMSF051N03+ AATTGAAGCAGCAGCACCTTTATGATTATTCTTGGGCTCGAATTTGACAGCAGAGGGGAG
rJMSF051J11+ AATTGAAGCAGCAGCACCTTTATGATTATTCTTGGGCTCGAATTTGACAGCAGAGGGGAG
rJMSF052J02+ CCTTTATGATTATTTTTGGGCTNGAATTTGACNGCNGAGGGGNG
rJMSF041L11+ AATTGAAGCAGCAGCACCTTTATGATTATTNTTGGGCTCGAATTTGACAGCAGAGGGGAG
                      ____________________________________________________________
consensus AATTGAAGCAGCAGCACCTTTATGATTATTCTTGGGCTCGAATTTGACAGCAGAGGGGAG
 
. : . : . : . : . : . :
rJMSF025M16+ AGTCGATTCAACCCAGGCCTCAACG
rJMSF051N03+ AGTCGATTCAACCCAGGCCTCAACG
rJMSF051J11+ AGTCGATTCAACCCAGGCCTCAACG
rJMSF052J02+ AGTNGNTTCNACCCNGGCCTCAACGCATCATCCCTAGGTCGTTGTGAGTTTTGACCCGGN
rJMSF041L11+ AGTCGATTCAACCCAGGCCTCAACGCATCATCCCTAGGTCGTTGTGAGTTTTGACNCGGA
                      ____________________________________________________________
consensus AGTCGATTCAACCCAGGCCTCAACGCATCATCCCTAGGTCGTTGTGAGTTTTGACCCGGA
 
. : . : . : . : . : . :
rJMSF052J02+ ACTGCCNATNAAAACNAACNTCNAGNATNTTNTTNTTNNGAATTNGNGTGTTAGCNGGAT
rJMSF041L11+ ACTGCCAATAAAAACAAACATCAAGAATATTATTATTCAGAATTAGTGTGTTAGCAGGAT
                      ____________________________________________________________
consensus ACTGCCAATAAAAACAAACATCAAGAATATTATTATTCAGAATTAGTGTGTTAGCAGGAT
 
. : . : . : . : . : . :
rJMSF052J02+ GTTGCNATGAACGGTTCAACGTTCATAGGGAGNTNATNCGTTACNTCNAAAGNCCCGNGG
rJMSF041L11+ GTTGCAATGAACGGTTCAACGTTCATAGGGAGTTAATACGTTACATCAAAAGACNCGAGG
                      ____________________________________________________________
consensus GTTGCAATGAACGGTTCAACGTTCATAGGGAGTTAATACGTTACATCAAAAGACCCGAGG
 
. : . : . : . : . : . :
rJMSF052J02+ NCNAGAAGCCCGGNTAAGCNTNGNTTAGGTGGTAGNGGTCATNGGNAACTCGTGTAGCNT
rJMSF041L11+ ACAAGAAGCCNGGATAAGCATCG-----GTGGTAGTGGTCATAGGAAACTCGTGTAGCAT
                      ____________________________________________________________
consensus ACAAGAAGCCCGGATAAGCATCGNTTAGGTGGTAGTGGTCATAGGAAACTCGTGTAGCAT
 
. : . : . : . : . : . :
rJMSF052J02+ TTTCAAATGTACCCGATTTAAAACCTACCCCCCNAAGCTTTGTTTTACTCCNATGTCGNT
rJMSF041L11+ TTTCAAATGTACCCGATTTAAAACCTACCCNCCAAAGCTTTGTTTTACTCCAATGTCGTT
                      ____________________________________________________________
consensus TTTCAAATGTACCCGATTTAAAACCTACCCCCCAAAGCTTTGTTTTACTCCAATGTCGTT
 
. : . : . : . : . : . :
rJMSF052J02+ TNTGAATATAAAGNTAAAACNATCAATTTTT
rJMSF041L11+ TCTGAATATAAAGTTAAAACAATCAATTTTTAGCAACAATTCTTGTAAAAAGAAACAACA
                      ____________________________________________________________
consensus TCTGAATATAAAGTTAAAACAATCAATTTTTAGCAACAATTCTTGTAAAAAGAAACAACA