Contig 004354:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040M23Sequence691004354 (4)ref|XP_009621576.1|147PREDICTED: uncharacterized protein LOC104113174 [Nicotiana tomentosiformis]761004354 (4)ref|XP_009621576.1|147PREDICTED: uncharacterized protein LOC104113174 [Nicotiana tomentosiformis]
JMSF041M23Sequence503004354 (4)ref|XP_009621576.1|119PREDICTED: uncharacterized protein LOC104113174 [Nicotiana tomentosiformis]673004354 (4)ref|XP_009621576.1|147PREDICTED: uncharacterized protein LOC104113174 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF041M23- AACTCTTTTAGCCTAGTTTCTTCCCATAGATGAGAAGGGCA
rJMSF040M23- AACAACTCTTTTAGCCTAGTTTCTTCCCATAGATGAGAAGGGCA
                      ____________________________________________________________
consensus AACAACTCTTTTAGCCTAGTTTCTTCCCATAGATGAGAAGGGCA
 
. : . : . : . : . : . :
JMSF040M23+ GAAGAAGAAGAAGTGTCGGAAACTCGGGGCGAAG
rJMSF041M23- TTGTAGTAATTAACTATCCTCAAGAAGAAGAAGAAGAAGTGTCGGAAACTCGGGGCGAAG
rJMSF040M23- TTGTAGTAATTAACTATCCTCAAGAAGAAGAAGAAGAAGTGTCGGAAACTCGGGGCGAAG
                      ____________________________________________________________
consensus TTGTAGTAATTAACTATCCTCAAGAAGAAGAAGAAGAAGTGTCGGAAACTCGGGGCGAAG
 
. : . : . : . : . : . :
JMSF040M23+ TGACCGGAAAAAGAGGGAGGAGCTGCGGCGGCGGCTGAGAGTCTCTAGGAGTATCGGTCC
rJMSF041M23- TGACCGGAAAAAGAGGGAGGAGCTGCGGCGGCGGCTGAGAGTCTCTAGGAGTATCGGTCC
rJMSF040M23- TGACCGGAAAAAGAGGGAGGAGCTGCGGCGGCGGCTGAGAGTCTCTAGGAGTATCGGTCC
                      ____________________________________________________________
consensus TGACCGGAAAAAGAGGGAGGAGCTGCGGCGGCGGCTGAGAGTCTCTAGGAGTATCGGTCC
 
. : . : . : . : . : . :
JMSF040M23+ TCGGAGATGGATGAAAGTAAAACTTCTTCTCAGCAATCGCTTTCTCCTCCTCAGACGAAG
rJMSF041M23- TCGGAGATGGATGAAAGTAAAACTTCTTCTCAGCAATCGCTTTCTCCTCCTCAGACGAAG
rJMSF040M23- TCGGAGATGGATGAAAGTAAAACTTCTTCTCAGCAATCGCTTTCTCCTCCTCAGACGAAG
                      ____________________________________________________________
consensus TCGGAGATGGATGAAAGTAAAACTTCTTCTCAGCAATCGCTTTCTCCTCCTCAGACGAAG
 
. : . : . : . : . : . :
JMSF040M23+ ACGACTTGTCGAACGGGTCTGCGGTCAACGGCGTGACGGGGCTGAGAACGAGCGCCGGAA
rJMSF041M23- ACGACTTGTCGAACGGGTCTGCGGTCAACGGCGTGACGGGGCTGAGAACGAGCGCCGGAA
JMSF041M23+ GACGGGGCTGAGAACGAGCGCCGGAA
rJMSF040M23- ACGACTTGTCGAACGGGTCTGCGGTCAACGGCGTGACGGGGCTGAGAACGAGCGCCGGAA
                      ____________________________________________________________
consensus ACGACTTGTCGAACGGGTCTGCGGTCAACGGCGTGACGGGGCTGAGAACGAGCGCCGGAA
 
. : . : . : . : . : . :
JMSF040M23+ AATCAAGAATGCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
rJMSF041M23- AATCAAGAATGCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
JMSF041M23+ AATCAAGAATNCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
rJMSF040M23- AATCAAGAATGCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
                      ____________________________________________________________
consensus AATCAAGAATGCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
 
. : . : . : . : . : . :
JMSF040M23+ TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
rJMSF041M23- TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
JMSF041M23+ TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
rJMSF040M23- TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
                      ____________________________________________________________
consensus TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
 
. : . : . : . : . : . :
JMSF040M23+ TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGGCGGCGGCGGCGGAGGAGGAGG
rJMSF041M23- TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGGCGGCGGCGGCGGAGGAGGAGG
JMSF041M23+ TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGNCGGCGGCGGCGGAGGAGGAGG
rJMSF040M23- TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGGCGGCGGCGGCGGAGGAGGAGG
                      ____________________________________________________________
consensus TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGGCGGCGGCGGCGGAGGAGGAGG
 
. : . : . : . : . : . :
JMSF040M23+ ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGAACGATG
rJMSF041M23- ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGAACGATG
JMSF041M23+ ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGANCGATG
rJMSF040M23- ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGAACGATG
                      ____________________________________________________________
consensus ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGAACGATG
 
. : . : . : . : . : . :
JMSF040M23+ AAGTGTCTGCTTGAACAAAGGTTGTTGGGTAAGGGTTATTAGCTACTTCAGATCTT-GGG
rJMSF041M23- AAGTGTCTGCTTGAACAAAGGTTGTTGGGTAAGGGTTATTAGCTACTTCAGATCTTGGGG
JMSF041M23+ AAGTGTNTGCTTGAACAAAGGTTGTCGGGTAAGGGTTATTAGCTACTTCAGATCTT-GGG
rJMSF040M23- AAGTGTCTGCTTGAACAAAGGTTGTTGGGTAAGGGTTATTAGCTACTTCAGATCTT-GGG
                      ____________________________________________________________
consensus AAGTGTCTGCTTGAACAAAGGTTGTTGGGTAAGGGTTATTAGCTACTTCAGATCTT-GGG
 
. : . : . : . : . : . :
JMSF040M23+ GTTAGTGGTGGGGAAGTACCACTGCCATTGTTGCTGTTT-GGTGAG-TTTATGGTAGAAT
rJMSF041M23- GTTAGTGGTGGGGAAGTACCACTGCCATTGTTGCTGTTTNGGTGAGTTTTATGGTAGAAT
JMSF041M23+ GTTAGTGGTGGGGAAGTACCACNGCCANTGTTGCTGTTT-GGTGAG-TTTATGGTAGAAT
rJMSF040M23- GTTAGTGGTGGGGAAGTACCACTGCCATTGTTGCTGTTT-GGTGAG-TTTATGGTAGAAT
                      ____________________________________________________________
consensus GTTAGTGGTGGGGAAGTACCACTGCCATTGTTGCTGTTT-GGTGAG-TTTATGGTAGAAT
 
. : . : . : . : . : . :
JMSF040M23+ CTTGAAGAGGTTTTGAGATGATTCCCATTGAAATTTTAGTTTCTTTCTTCATCTTTTTCC
rJMSF041M23- CTTGAANAGGTTTTGAGATGATTCCCATTGAA
JMSF041M23+ CTTGAAGAGGTTTTGAGATGATTCCCATTGAAATTNTAGTTTCTTTCTTCATCTTTTTCC
rJMSF040M23- CTTGAAGAGGTTTTGAGATGATTCCCATTGAAATTTTAGTTTCTTTCTTCATCTTTTTCC
                      ____________________________________________________________
consensus CTTGAAGAGGTTTTGAGATGATTCCCATTGAAATTTTAGTTTCTTTCTTCATCTTTTTCC
 
. : . : . : . : . : . :
JMSF040M23+ TCTCTCTCTCTCTCTATGTATCCAAAATTTTGATTTGGAGAGAAAAGAATGGGAAGGATC
JMSF041M23+ TCTCTCTCTCTCTCTATGTATCCAAAATTTTGATTTGGAGAGAAAAGAATGGGAAGGATC
rJMSF040M23- TCTCTCTCTCTCTCTATGTATCCAAAATTTTGATTTGGAGAGAAAAGAATGGGAAGGATC
                      ____________________________________________________________
consensus TCTCTCTCTCTCTCTATGTATCCAAAATTTTGATTTGGAGAGAAAAGAATGGGAAGGATC