Contig 004353:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040J19Sequence627004353 (2)gb|KJB17803.1|6e-61hypothetical protein B456_003G015900 [Gossypium raimondii] gb|KJB17804.1| hypoth567004353 (2)ref|XP_007156925.1|1e-26hypothetical protein PHAVU_002G028800g [Phaseolus vulgaris] gb|ESW28919.1| hypot

Alignment

This contig is upended


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JMSF040J19- GGATTCTCTCTCTCTCTAGATCGCCTTTTTCATCCACATCTGAGAGTGA
                      ____________________________________________________________
consensus GGATTCTCTCTCTCTCTAGATCGCCTTTTTCATCCACATCTGAGAGTGA
 
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JMSF040J19- AGAACACACGGGAATATATCATTCATTCACATCCAGCTCGATCCCGACAACAATGGATAG
                      ____________________________________________________________
consensus AGAACACACGGGAATATATCATTCATTCACATCCAGCTCGATCCCGACAACAATGGATAG
 
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JMSF040J19- AAGAATCAAATAATCCTGTTAAAACAACATAATTCGATTTTCGCTCTTCGTCTTGTTCTT
                      ____________________________________________________________
consensus AAGAATCAAATAATCCTGTTAAAACAACATAATTCGATTTTCGCTCTTCGTCTTGTTCTT
 
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JMSF040J19- GAATTTATTGGGGTTCTGGAACAATCGGGGAAATGAAGGATGATGACGCGTTGCCGATAT
                      ____________________________________________________________
consensus GAATTTATTGGGGTTCTGGAACAATCGGGGAAATGAAGGATGATGACGCGTTGCCGATAT
 
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JMSF040J19- CAACTCCGACGTCGTATTCGGCATCATCCGCCACTACCGCCGGCCATTCGAGGAAGGAGA
                      ____________________________________________________________
consensus CAACTCCGACGTCGTATTCGGCATCATCCGCCACTACCGCCGGCCATTCGAGGAAGGAGA
 
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JMSF040J19- GTTCCCATTCGGTTCTCTTCGGCCGAGGCCGGTACAAGTTCTGGGCGTTGGCAGCTATTC
                      ____________________________________________________________
consensus GTTCCCATTCGGTTCTCTTCGGCCGAGGCCGGTACAAGTTCTGGGCGTTGGCAGCTATTC
 
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JMSF040J19- TACTGCTTGCCTTCTGGTCAATGTTCACCGGCACTGTCACTCTCCGGTGGTCCGCCGGAA
                      ____________________________________________________________
consensus TACTGCTTGCCTTCTGGTCAATGTTCACCGGCACTGTCACTCTCCGGTGGTCCGCCGGAA
 
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JMSF040J19- ATCTCAACCGTTTCTCCGACGACTTCGATATTCCGCTGCACGAAGATCTCGACGTCCTCG
rJMSF040J19+ CGCTGCNCGAAGATCTCGACGTCCTCG
                      ____________________________________________________________
consensus ATCTCAACCGTTTCTCCGACGACTTCGATATTCCGCTGCACGAAGATCTCGACGTCCTCG
 
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JMSF040J19- AAATGGAGGAGAGAGAGAAGATGGTGAAGCATATGTGGGATGTGTACACTAACAGCCGTC
rJMSF040J19+ AAATGGAGGAGAGAGAGAAGATGGTGAAGCATATGTGGGATGTGTACNCTAACAGCCGTC
                      ____________________________________________________________
consensus AAATGGAGGAGAGAGAGAAGATGGTGAAGCATATGTGGGATGTGTACACTAACAGCCGTC
 
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JMSF040J19- GGATCAGATTGCCTAAGTTCTGGCAGCAGGCCTTCGAGGCGGCCTACGAGGACTTAACCA
rJMSF040J19+ GGATCAGATTGCCTAAGTTNTGGCAGCAGGCCTTCGAGGCGGCCTACGAGGACTTAACCN
                      ____________________________________________________________
consensus GGATCAGATTGCCTAAGTTCTGGCAGCAGGCCTTCGAGGCGGCCTACGAGGACTTAACCA
 
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JMSF040J19- GTGATGAGCCTGAAGTGCGAGAGGCTGCCATTTCCGAG
rJMSF040J19+ GTGATGAGCCTGAAGTGCGAGAGGCTGCCNTTTCCGAGATCGCTAAAANGTCTATTCGCT
                      ____________________________________________________________
consensus GTGATGAGCCTGAAGTGCGAGAGGCTGCCATTTCCGAGATCGCTAAAANGTCTATTCGCT
 
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rJMSF040J19+ CCATCCNTTTTGAGAGCCCNCCCGTTCNCNCGTTGGCGATTCGGGAGTTGTNTAAAGCAA
                      ____________________________________________________________
consensus CCATCCNTTTTGAGAGCCCNCCCGTTCNCNCGTTGGCGATTCGGGAGTTGTNTAAAGCAA
 
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rJMSF040J19+ ACNGAGTTCAAGAAAATGATNTGAGCAAGGAGTAAATTATGACTCGAAGAATGCTTATGG
                      ____________________________________________________________
consensus ACNGAGTTCAAGAAAATGATNTGAGCAAGGAGTAAATTATGACTCGAAGAATGCTTATGG
 
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rJMSF040J19+ ATCCTAAGAAGTNTGCTAGGTTGCCGATGTTTCNCNCGGGATNTACTGTCGTTNTGGGGG
                      ____________________________________________________________
consensus ATCCTAAGAAGTNTGCTAGGTTGCCGATGTTTCNCNCGGGATNTACTGTCGTTNTGGGGG
 
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rJMSF040J19+ GAAACTATACTCCTGTTCCTCACTTTTGCAAGAGGGGCAAAAACAATGTATTTATTTAGG
                      ____________________________________________________________
consensus GAAACTATACTCCTGTTCCTCACTTTTGCAAGAGGGGCAAAAACAATGTATTTATTTAGG
 
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rJMSF040J19+ TTTTCNTTCCTAATTATTATTATAATTTTTTTTTTTTCAGTTTCTTTTATTTTCCCGCTG
                      ____________________________________________________________
consensus TTTTCNTTCCTAATTATTATTATAATTTTTTTTTTTTCAGTTTCTTTTATTTTCCCGCTG
 
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rJMSF040J19+ GGTGAAGAGTGAAACAACATTTTGATTAAATTAATTCATACATAGAAAATTTTGTGTTAC
                      ____________________________________________________________
consensus GGTGAAGAGTGAAACAACATTTTGATTAAATTAATTCATACATAGAAAATTTTGTGTTAC