Contig 004318:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022M17Sequence457006189 (5)ref|XP_006338134.1|4e-06PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Solanum tuberosum]767004318 (3)ref|XP_009761470.1|4e-30PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMFF040E07Sequence426006189 (5)ref|XP_006338134.1|4e-06PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Solanum tuberosum]718004318 (3)ref|XP_009761470.1|3e-18PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMSF035H16Sequence645006189 (5)ref|XP_009761470.1|1e-25PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]738004318 (3)ref|XP_009761470.1|1e-04PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF022M17+                                     AATGACAGCAAGGTAAAACCTGTGGAAATTGAG
                      ____________________________________________________________
consensus                                        AATGACAGCAAGGTAAAACCTGTGGAAATTGAG
 
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rJMFF022M17+          AGCGTCTTGTCAAAGGGAGCTTACATGCTTCTCTACTCGAGGTGCTCTCCACGTGCCCCA
rJMFF040E07+                         GGAGCTTACATGCTTCTCTACTCGAGGTGCTCTCCACGTGCCCCA
                      ____________________________________________________________
consensus             AGCGTCTTGTCAAAGGGAGCTTACATGCTTCTCTACTCGAGGTGCTCTCCACGTGCCCCA
 
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rJMFF022M17+          AAATTAATAAGGAGTTTGACTTCTCATGATCCAAGGGGACAGAAATATGTAAATTGTAAA
rJMFF040E07+          AAATTAATAAGGAG-TTGACTTCTCATGATCCAAGGGGACAGAAATATGTAAATTGTAAA
                      ____________________________________________________________
consensus             AAATTAATAAGGAGTTTGACTTCTCATGATCCAAGGGGACAGAAATATGTAAATTGTAAA
 
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rJMFF022M17+          TCAAGTTCTCACACAAATTCATGGGATCTCTCTAAAGGTGATTCTACAAATGACCCAGCA
rJMFF040E07+          TCAAGTTCTCACACAAATTCATGGGATCTCTCTAAAGGTGATTCTACAAATGACCCAGCA
rJMSF035H16+                                                    TCTACAAATGACCCAGCA
                      ____________________________________________________________
consensus             TCAAGTTCTCACACAAATTCATGGGATCTCTCTAAAGGTGATTCTACAAATGACCCAGCA
 
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rJMFF022M17+          TGTAGGGAATGCTTCAATTCTGTTCAAGCGAGTTCCTGGCCACATCGGACAATATTCGAG
rJMFF040E07+          TGTAGGGAATGCTTCAATTCTGTTCAAGCGAGTTCCTGGCCACATCGGACAATATTCGAG
rJMSF035H16+          TGTAGGGAATGCTTCAATTCTGTTCAAGCGAGTTCCTGGCCACATCGGACAATATTCGAG
                      ____________________________________________________________
consensus             TGTAGGGAATGCTTCAATTCTGTTCAAGCGAGTTCCTGGCCACATCGGACAATATTCGAG
 
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rJMFF022M17+          GACTCATCCAGTGACAACTCATCGTCTCTTTTCTCCGAAGGCTGTTCTTCTAGCACAGAC
rJMFF040E07+          GACTCATCCAGTGACAACTCATCGTCTCTTTTCTCCGAAGGCTGTTCTTCTAGCACAGAC
rJMSF035H16+          GACTCATCCAGTGACAACTCATCGTCTCTTTTCTCCGAAGGCTGTTCTTCTAGCACAGAC
                      ____________________________________________________________
consensus             GACTCATCCAGTGACAACTCATCGTCTCTTTTCTCCGAAGGCTGTTCTTCTAGCACAGAC
 
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rJMFF022M17+          AGCAGCTACAGGGATTCAATAAGCGCAGAGGATTATGCAGCAGATCAACTATTTGGTGAT
rJMFF040E07+          AGCAGCTACAGGGATTCAATAAGCGCAGAGGATTATGCAGCAGATCAACTATTTGGTGAT
rJMSF035H16+          AGCAGCTACAGGGATTCAATAAGCGCAGAGGATTATGCAGCAGATCAACTATTTGGTGAT
                      ____________________________________________________________
consensus             AGCAGCTACAGGGATTCAATAAGCGCAGAGGATTATGCAGCAGATCAACTATTTGGTGAT
 
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rJMFF022M17+          CCTGGAGGCGCCTGTTGGAATAGCCCTTGGAGGATCTCTACTGATTCCGACACATCTTCA
rJMFF040E07+          CCTGGAGGCGCCTGTTGGAATAGCCCTTGGAGGATCTCTACTGATTCCGACACATCTTCA
rJMSF035H16+          CCTGGAGGCGCCTGTTGGAATAGCCCTTGGAGGATCTCTACTGATTCCGACACATCTTCA
                      ____________________________________________________________
consensus             CCTGGAGGCGCCTGTTGGAATAGCCCTTGGAGGATCTCTACTGATTCCGACACATCTTCA
 
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rJMFF022M17+          TCCTCGTCCTCTCCTTCTCCATTGTATTCAAGGCATTCACGCCTCTCTAATATGGGGCAT
rJMFF040E07+          TCCTCGTCCTCTCCTTCTCCATTGTATTCAAGGCATTCACGCCTCTCTAATATGGGGCAT
rJMSF035H16+          TCCTCGTCCTCTCCTTCTCCATTGTATTCAAGGCATTCACGCCTCTCTAATATGGGGCAT
                      ____________________________________________________________
consensus             TCCTCGTCCTCTCCTTCTCCATTGTATTCAAGGCATTCACGCCTCTCTAATATGGGGCAT
 
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rJMFF022M17+          TACGCGTCAGGCTATCCCGAGACGAGTGGATATGCAGATTCAGCCGTCGAGGATCGGGGA
rJMFF040E07+          TACGCGTCAGGCTATCCCGAGACGAGTGGATATGCAGATTCAGCCGTCGAGGATCGGGGA
rJMSF035H16+          TACGCGTCAGGCTATCCCGAGACGAGTGGATATGCAGATTCAGCCGTCGAGGATCGGGGA
                      ____________________________________________________________
consensus             TACGCGTCAGGCTATCCCGAGACGAGTGGATATGCAGATTCAGCCGTCGAGGATCGGGGA
 
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rJMFF022M17+          TTTTGGACAGGAACATGTGATCCCGAGGTATCGAAAAGCAAAGGAAGTATTCCCTCGTTG
rJMFF040E07+          TTTTGGACAGGAACATGTGATCCCGAGGTATCGAAAAGCAAAGGAAGTATTCCCTCGTTG
rJMSF035H16+          TTTTGGACAGGAACATGTGATCCCGAGGTATCGAAAAGCAAAGGAAGTATTCCCTCGTTG
                      ____________________________________________________________
consensus             TTTTGGACAGGAACATGTGATCCCGAGGTATCGAAAAGCAAAGGAAGTATTCCCTCGTTG
 
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rJMFF022M17+          AGTCCGGATTCAGCCAAACAGTGTAGACGTTTAGGTGGTAGTAGTAGTAGCGGCGGCCAG
rJMFF040E07+          AGTCCGGATTCAGCCAAACAGTGTAGACGTTTAGGTGGTAGTAGTAGTAGCGGCGGCCAG
rJMSF035H16+          AGTCCGGATTCAGCCAAACAGTGTAGACATTTAGGTGGTAGTAGTAGTAGCGGCGGCCAG
                      ____________________________________________________________
consensus             AGTCCGGATTCAGCCAAACAGTGTAGACGTTTAGGTGGTAGTAGTAGTAGCGGCGGCCAG
 
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rJMFF022M17+          AGGTTAGGATCGGATAAACCTTTTGGAACCATGAAATATAGATGAGGTAAACCCCCAATT
rJMFF040E07+          AGGTTAGGATCGGATAAACCTTTTGGAACCATGAAATATAGATGAGGTAAACCCCCAATT
rJMSF035H16+          AGGTTAGGATCGGATAAACCTTTTGGAACCATGAAATATAGATGAGGTAAACCCCCAATT
                      ____________________________________________________________
consensus             AGGTTAGGATCGGATAAACCTTTTGGAACCATGAAATATAGATGAGGTAAACCCCCAATT
 
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rJMSF035H16+          TGAACATCATACAATTAAGTTTTGGTAATGTAAAGTGGTAAATAAACTTTGATGAGTTGT
                      ____________________________________________________________
consensus             TGAACATCATACAATTAAGTTTTGGTAATGTAAAGTGGTAAATAAACTTTGATGAGTTGT
 
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rJMSF035H16+          AGAGTTGGGGGTTAGAGGTTGGGTGTACGTCTTGGGCCGTGTTAAGAAACCGGCCATAAT
                      ____________________________________________________________
consensus             AGAGTTGGGGGTTAGAGGTTGGGTGTACGTCTTGGGCCGTGTTAAGAAACCGGCCATAAT
 
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rJMSF035H16+          TTTGTCACTCTTCCCCTTATATTTGTAGGGAGTAACCATATATAATATTTATATATATAT
                      ____________________________________________________________
consensus             TTTGTCACTCTTCCCCTTATATTTGTAGGGAGTAACCATATATAATATTTATATATATAT