clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF033L04 | Sequence | 674 | 024225 | ref|XP_006344474.1| | 3e-49 | PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic | 741 | 004314 (2) | ref|XP_011071956.1| | 2e-69 | PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic |
JMSF034L04 | Sequence | 722 | 004314 (2) | ref|XP_006344474.1| | 1e-62 | PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic |
This contig is upended
. : . : . : . : . : . :
rJMSF033L04+ ATGTGGACNGTGATCTATTGGA
____________________________________________________________
consensus ATGTGGACNGTGATCTATTGGA
. : . : . : . : . : . :
rJMSF033L04+ TGTATTGATAAATGGTTTTGTGAGTCAGAGAAAAGTAGTCGGTGCTTATGAATTGCTAAA
rJMSF034L04+ GGTTTTGTGAGTCAGAGAAAAGTAGTCGGTGCTTATGAATTGCTAAA
____________________________________________________________
consensus TGTATTGATAAATGGTTTTGTGAGTCAGAGAAAAGTAGTCGGTGCTTATGAATTGCTAAA
. : . : . : . : . : . :
rJMSF033L04+ AGAGATGGTGAAGCAGGCTCAGTTGCGACCATGGCAAGCAACATATAAGAACCTGATCGA
rJMSF034L04+ AGAGATGGTGAAGCAGGCTCAGTTGCGACCATGGCAAGCAACATATAAGAACCTGATCGA
____________________________________________________________
consensus AGAGATGGTGAAGCAGGCTCAGTTGCGACCATGGCAAGCAACATATAAGAACCTGATCGA
. : . : . : . : . : . :
rJMSF033L04+ AAAGCTGTTGGGGGAAATGAAAATGGATGAAGCATTGGATCTACTTGGTATGATGAAGAA
rJMSF034L04+ AAAGCTGTTGGGGGAAATGAAAATGGATGAAGCATTGGATCTACTTGGTATGATGAAGAA
____________________________________________________________
consensus AAAGCTGTTGGGGGAAATGAAAATGGATGAAGCATTGGATCTACTTGGTATGATGAAGAA
. : . : . : . : . : . :
rJMSF033L04+ GCAGAATTATCCACCTTTTGCAGAACCTTTTTATCGGTATATTTCAAAGCTGGGGACAGT
rJMSF034L04+ GCAGAATTATCCACCTTTTGCAGAACCTTTTTATCGGTATATTTCAAAGCTGGGGACAGT
____________________________________________________________
consensus GCAGAATTATCCACCTTTTGCAGAACCTTTTTATCGGTATATTTCAAAGCTGGGGACAGT
. : . : . : . : . : . :
rJMSF033L04+ GGAGGATGCAATGGAATTTCTCAAGGCATTGAGTAAGGGATATCCATCTGTTGCAGCTTA
rJMSF034L04+ GGAGGATGCAATGGAATTTCTCAAGGCATTGAGTAAGGGATATCCATCTGTTGCAGCTTA
____________________________________________________________
consensus GGAGGATGCAATGGAATTTCTCAAGGCATTGAGTAAGGGATATCCATCTGTTGCAGCTTA
. : . : . : . : . : . :
rJMSF033L04+ CCATCATGTTTTGGAATCCTTCTTTGAAGAGGGTAGACACTCCGAGGCAAAGGATCTTCT
rJMSF034L04+ CCATCATGTTTTGGAATCCTTCTTTGAAGAGGGTAGACACTCCGAGGCAAAGGATCTTCT
____________________________________________________________
consensus CCATCATGTTTTGGAATCCTTCTTTGAAGAGGGTAGACACTCCGAGGCAAAGGATCTTCT
. : . : . : . : . : . :
rJMSF033L04+ TTACAAGTGCCCTCACCATATTCGTAAACATCCTAAAATTTGCAGCCTTTTTGGTTCTGC
rJMSF034L04+ TTACAAGTGCCCTCACCATATTCGTAAACATCCTAAAATTTGCAGCCTTTTTGGTTCTGC
____________________________________________________________
consensus TTACAAGTGCCCTCACCATATTCGTAAACATCCTAAAATTTGCAGCCTTTTTGGTTCTGC
. : . : . : . : . : . :
rJMSF033L04+ AAAGATCACCAGTTGAAGTGTGCTTGTGACTATTCCCTCAGGTCAAGACAAGAAACTGAA
rJMSF034L04+ AAAGATCACCAGTTGAAGTGTGCTTGTGACTATTCCCTCAGGTCAAGACAAGAAACTGAA
____________________________________________________________
consensus AAAGATCACCAGTTGAAGTGTGCTTGTGACTATTCCCTCAGGTCAAGACAAGAAACTGAA
. : . : . : . : . : . :
rJMSF033L04+ AATTAGGTTCACGGATGAGATTGGTGCATGAGAACACTCTGATTCATGATGGGGGCGAAG
rJMSF034L04+ AATTAGGTTCACGGATGAGATTGGTGCATGAGAACACTCTGATTCATGATGGGGGCGAAG
____________________________________________________________
consensus AATTAGGTTCACGGATGAGATTGGTGCATGAGAACACTCTGATTCATGATGGGGGCGAAG
. : . : . : . : . : . :
rJMSF033L04+ CTGTACGAGGTAAAGGCGTAAAGCTGCCAGAGAAGTATTTCATGACACGACTCGTTTGGT
rJMSF034L04+ CTGTACGAGGTAAAGGCGTAAAGCTGCCAGAGAAGTATTTCATGACACGACTCGTTTGGT
____________________________________________________________
consensus CTGTACGAGGTAAAGGCGTAAAGCTGCCAGAGAAGTATTTCATGACACGACTCGTTTGGT
. : . : . : . : . : . :
rJMSF033L04+ ATGTAGGTTCATTGAAAAGCTTTGATGAAGTTTTGGAAACTGCAAATTGGTTTTCATCTT
rJMSF034L04+ ATGTAGGTTCATTGAAAAGCTTTGATGAAGTTTTGGAAACTGCAAATTGGTTTTCATCTT
____________________________________________________________
consensus ATGTAGGTTCATTGAAAAGCTTTGATGAAGTTTTGGAAACTGCAAATTGGTTTTCATCTT
. : . : . : . : . : . :
rJMSF033L04+ TGGTTTAGCTTTTTACTAGAGATGATGTACAAGGAAGGCATAGCAAGCTTT
rJMSF034L04+ TGGTTTAGCTTTTTACTAGAGATGATGTACAAGGAAGGCATAGCAAGCTTTAGCATCCTT
____________________________________________________________
consensus TGGTTTAGCTTTTTACTAGAGATGATGTACAAGGAAGGCATAGCAAGCTTTAGCATCCTT