| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF021C22 | Sequence | 722 | 000930 (3) | gb|KDP27265.1| | 6e-78 | hypothetical protein JCGZ_19964 [Jatropha curcas] | 778 | 004313 (3) | emb|CDP02333.1| | 6e-95 | unnamed protein product [Coffea canephora] |
| JMSF033I09 | Sequence | 687 | 000930 (3) | ref|XP_009793206.1| | 7e-109 | PREDICTED: ABC transporter B family member 27-like, partial [Nicotiana sylvestr | 726 | 004313 (3) | emb|CDP02333.1| | 6e-111 | unnamed protein product [Coffea canephora] |
| JMSF043C05 | Sequence | 780 | 000930 (3) | ref|XP_009793206.1| | 3e-120 | PREDICTED: ABC transporter B family member 27-like, partial [Nicotiana sylvestr | 695 | 004313 (3) | dbj|BAJ86187.1| | 4e-126 | predicted protein [Hordeum vulgare subsp. vulgare] |
This contig is upended
. : . : . : . : . : . :
rJMSF043C05+ GGTCCAAGTGGAGGCGGAAAAAACAACCA
____________________________________________________________
consensus GGTCCAAGTGGAGGCGGAAAAAACAACCA
. : . : . : . : . : . :
rJMSF043C05+ TTGCCAACTTGATTGAGAGGTTCTATGACCCGTTAAAGGGACAAATATTGCTTAATGGCG
rJMSF021C22+ TGCCAACTTGATTGAGAGGTTCTATGACCCGNTAAAGGGACAAATATTGCTTAATGGCG
rJMSF033I09+ ATTGCTTAATGGCG
____________________________________________________________
consensus TTGCCAACTTGATTGAGAGGTTCTATGACCCGTTAAAGGGACAAATATTGCTTAATGGCG
. : . : . : . : . : . :
rJMSF043C05+ TTCCTTTGATGGAAATATCACATGAATATTTACACAGCAAGATTAGTATAGTAAGCCAGG
rJMSF021C22+ TTCCTTTGATGGAAATATCACATGAATATTTACACAGCAAGATTAGTATAGTAAGCCAGG
rJMSF033I09+ TTCCTTTGATGGAAATATCACATGAATATTTACACAGCAAGATTAGTATAGTAAGCCAGG
____________________________________________________________
consensus TTCCTTTGATGGAAATATCACATGAATATTTACACAGCAAGATTAGTATAGTAAGCCAGG
. : . : . : . : . : . :
rJMSF043C05+ AGCCTGTTCTTTTCAACTGTTCCATTCAAGAGAACATTGCATATGGTTTTGAAGGCAGCA
rJMSF021C22+ AGCCTGTTCTTTTCAACTGTTCCATTCAAGAGAACATTGCATATGGTTTTGAAGGCAGCA
rJMSF033I09+ AGCCTGTTCTTTTCAACTGTTCCATTCAAGAGAACATTGCATATGGTTTTGAAGGCAGCA
____________________________________________________________
consensus AGCCTGTTCTTTTCAACTGTTCCATTCAAGAGAACATTGCATATGGTTTTGAAGGCAGCA
. : . : . : . : . : . :
rJMSF043C05+ CCAGCAGTGATGTCGTAGAAAATGCAGCA--------AAAATGGCGAACGCTCATGATTT
rJMSF021C22+ CCAGCAGTGATGTCGTAGAAAATGCAGCATGCTGCAGAAAATGGCGAACGCTCATGATTT
rJMSF033I09+ CCAGCAGTGATGTCGTAGAAAATGCAGCA--------AAAATGGCGAACGCTCATGATTT
____________________________________________________________
consensus CCAGCAGTGATGTCGTAGAAAATGCAGCA--------AAAATGGCGAACGCTCATGATTT
. : . : . : . : . : . :
rJMSF043C05+ CATTGAATCGTTTCCTGATAAATATCAAACTGTTGTTGGAGAACGCGGACTCAGGCTATC
rJMSF021C22+ CATTGAATCGTTTCCTGATAAATATCAAACTGTTGTTGGAGAACGCGGACTCAGGCTATC
rJMSF033I09+ CATTGAATCGTTTCCTGATAAATATCAAACTGTTGTTGGAGAACGCGGACTCAGGCTATC
____________________________________________________________
consensus CATTGAATCGTTTCCTGATAAATATCAAACTGTTGTTGGAGAACGCGGACTCAGGCTATC
. : . : . : . : . : . :
rJMSF043C05+ AGGAGGCCAGAAGCAACGAATAGCAATCGCTAGGGCTCTTTTGATGAATCCTAGAGTCCT
rJMSF021C22+ AGGAGGCCAGAAGCAACGAATAGCAATCGCTAGGGCTCTTTTGATGAATCCTAGAGTCCT
rJMSF033I09+ AGGAGGCCAGAAGCAACGAATAGCAATCGCTAGGGCTCTTTTGATGAATCCTAGAGTCCT
____________________________________________________________
consensus AGGAGGCCAGAAGCAACGAATAGCAATCGCTAGGGCTCTTTTGATGAATCCTAGAGTCCT
. : . : . : . : . : . :
rJMSF043C05+ GCTATTGGATGAAGCTACTAGCGCTCTAGACGCCGAGAGTGAATACCTAGTACAAGACGC
rJMSF021C22+ GCTATTGGATGAAGCTACTAGCGCTCTAGACGCCGAGAGTGAATACCTAGTACAAGACGC
rJMSF033I09+ GCTATTGGATGAAGCTACTAGCGCTCTAGACGCCGAGAGTGAATACCTAGTACAAGACGC
____________________________________________________________
consensus GCTATTGGATGAAGCTACTAGCGCTCTAGACGCCGAGAGTGAATACCTAGTACAAGACGC
. : . : . : . : . : . :
rJMSF043C05+ CATGGATTCTCTGATGAGAGGCAGGACAGTTCTTGTAATCGCCCACCGGCTATCAACCGT
rJMSF021C22+ CATGGATTCTCTGATGAGAGGCAGGACAGTTCTTGTAATCGCCCACCGGCTATCAACCGT
rJMSF033I09+ CATGGATTCTCTGATGAGAGGCAGGACAGTTCTTGTAATCGCCCACCGGCTATCAACCGT
____________________________________________________________
consensus CATGGATTCTCTGATGAGAGGCAGGACAGTTCTTGTAATCGCCCACCGGCTATCAACCGT
. : . : . : . : . : . :
rJMSF043C05+ AAAAACTGCAGACACAGTTGCAGTGGTGTCTGATGGACAGATAGTAGAGAGTGGGACGCA
rJMSF021C22+ AAAAACTGCAGACACAGTTGCAGTGGTGTCTGATGGACAGATAGTAGAGAGTGGGACGCA
rJMSF033I09+ AAAAACTGCAGACACAGTTGCAGTGGTGTCTGATGGACAGATAGTAGAGAGTGGGACGCA
____________________________________________________________
consensus AAAAACTGCAGACACAGTTGCAGTGGTGTCTGATGGACAGATAGTAGAGAGTGGGACGCA
. : . : . : . : . : . :
rJMSF043C05+ CAATGAACTTCTTGCCAAGGATGGCATTTACACTGCACTGGTCAGGAGGCAATTGCAGGC
rJMSF021C22+ CAATGAACTTCTTGCCAAGGATGGCATTTACACTGCACTGGTCAGGAGGCAATTGCAGGC
rJMSF033I09+ CAATGAACTTCTTGCCAAGGATGGCATTTACACTGCACTGGTCAGGAGGCAATTGCAGGC
____________________________________________________________
consensus CAATGAACTTCTTGCCAAGGATGGCATTTACACTGCACTGGTCAGGAGGCAATTGCAGGC
. : . : . : . : . : . :
rJMSF043C05+ ACCAAGAAATGAACTCTAAGATCAGTCACTTGAGTGGTTTGTTATTTGCTTTATCTATTC
rJMSF021C22+ ACCAAGAAATGAACTCTAAGATCAGTCACTTGAGTGGTTTGTTATTTGCTTTATCTATTC
rJMSF033I09+ ACCAAGAAATGAACTCTAAGATCAGTCACTTGAGTGGTTTGTTATTTGCTTTATCTATTC
____________________________________________________________
consensus ACCAAGAAATGAACTCTAAGATCAGTCACTTGAGTGGTTTGTTATTTGCTTTATCTATTC
. : . : . : . : . : . :
rJMSF043C05+ TAAAACTTTCATTT
rJMSF021C22+ TAAAACTTTCATTTTGCTTGTGAGAATTGAAGGCTAACCAGATAAAATGTTGTTAGACAG
rJMSF033I09+ TAAAACTTTCATTTTGCTTGTGAGAATTGAAGGCTAACCAGATAAAATGTTGTTAGACAG
____________________________________________________________
consensus TAAAACTTTCATTTTGCTTGTGAGAATTGAAGGCTAACCAGATAAAATGTTGTTAGACAG
. : . : . : . : . : . :
rJMSF021C22+ AGCTTATGACTTATAGATTATGATTATGGATGGAGTTAACAATAAATTTAACTATTTTT
rJMSF033I09+ AGCTTATGACTTATAGATTATGATTATGGATGGAGTTAACAATAAATTTAACTATTTTTG
____________________________________________________________
consensus AGCTTATGACTTATAGATTATGATTATGGATGGAGTTAACAATAAATTTAACTATTTTTG