Contig 004305:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026M12Sequence656002270 (2)ref|XP_006359754.1|6e-79PREDICTED: F-box/LRR-repeat protein 4-like isoform X1 [Solanum tuberosum] ref|X222004305 (2)
JMSF032K21Sequence656002270 (2)ref|XP_006359754.1|6e-79PREDICTED: F-box/LRR-repeat protein 4-like isoform X1 [Solanum tuberosum] ref|X646004305 (2)ref|XP_009626357.1|8e-12PREDICTED: F-box/LRR-repeat protein 20-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF032K21+ TGAATTCGTTACTGGTAATGGGATTTGCTCCTTCCAGAATCACGAA
                      ____________________________________________________________
consensus TGAATTCGTTACTGGTAATGGGATTTGCTCCTTCCAGAATCACGAA
 
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rJMSF032K21+ TCATTGAAAGAGCTTATTTTGAGATATTGTAAAAATCTCTTGGTTTCTGATTTGGTGTAT
                      ____________________________________________________________
consensus TCATTGAAAGAGCTTATTTTGAGATATTGTAAAAATCTCTTGGTTTCTGATTTGGTGTAT
 
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rJMSF032K21+ TTGGTGCATGGATGCGAGACGCTAGAGCGGATCGTGCTTGATCGAGCACTGAAGATATGG
                      ____________________________________________________________
consensus TTGGTGCATGGATGCGAGACGCTAGAGCGGATCGTGCTTGATCGAGCACTGAAGATATGG
 
. : . : . : . : . : . :
rJMSF032K21+ ATTCCCGCACTAGCGGATCATAATGTAAGAAATACTTGTAGGATTGAGTGGAAATGATAA
                      ____________________________________________________________
consensus ATTCCCGCACTAGCGGATCATAATGTAAGAAATACTTGTAGGATTGAGTGGAAATGATAA
 
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rJMSF032K21+ GCATGAATACTCATTTAAAACAAGCCTACGATCAAAGTGTTCTAGTGGAGGAAAAGGGGC
                      ____________________________________________________________
consensus GCATGAATACTCATTTAAAACAAGCCTACGATCAAAGTGTTCTAGTGGAGGAAAAGGGGC
 
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rJMSF032K21+ AGTCATCCACAACCATTGTCGATCGGGAAATGCTTCTTACCCCTACAAAAACCACAAGTT
                      ____________________________________________________________
consensus AGTCATCCACAACCATTGTCGATCGGGAAATGCTTCTTACCCCTACAAAAACCACAAGTT
 
. : . : . : . : . : . :
rJMSF026M12+ TATGATGATGATNGTGGTTATGGAAACATAGAAATCGTAGTTTTGGAGCA
rJMSF032K21+ TGGAATGTGTTATGATGATGCTGGTGGTTATGGAAACATAGAAATTGTAGTTTTGGAGCA
                      ____________________________________________________________
consensus TGGAATGTGTTATGATGATGCTGGTGGTTATGGAAACATAGAAATTGTAGTTTTGGAGCA
 
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rJMSF026M12+ TATTAGGTTTTATCCATTNTNAATTNNGATANCTNTNNGCTGCAGATTCTGNNTGNNNTA
rJMSF032K21+ TATTAGGTTTTATCCATTCTGAATTCTGATAACTCTCTGCTGCAGATTCTGTTTGTGTTA
                      ____________________________________________________________
consensus TATTAGGTTTTATCCATTCTGAATTCTGATAACTCTCTGCTGCAGATTCTGTTTGTGTTA
 
. : . : . : . : . : . :
rJMSF026M12+ ANGNCTGACTTNTGGTACANACATCATGATNATNTGCTTCAGGTNGGAATGGTTTTCGGG
rJMSF032K21+ ATGGCTGACTTTTGGTACAGACATCATGATTATCTGCTTCAGGTTGGAATGGTTTTCGGG
                      ____________________________________________________________
consensus ATGGCTGACTTTTGGTACAGACATCATGATTATCTGCTTCAGGTTGGAATGGTTTTCGGG
 
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rJMSF026M12+ AGGATCCTGGANTGGATNTCAGNGACTGTTAGAATNGAGTTCCGAGGATGTT
rJMSF032K21+ AGGATCCTGGACTGGATTTCAGGGACTGTTAGAATTGAGTTCCGAGGATGTTGCGAATAG
                      ____________________________________________________________
consensus AGGATCCTGGACTGGATTTCAGGGACTGTTAGAATTGAGTTCCGAGGATGTTGCGAATAG
 
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rJMSF032K21+ CTAGCTGCTTTCTTTTGGCTGCTGGAGTTTCTGAAAATTTTGTGTTGCAGATTCTATTTG
                      ____________________________________________________________
consensus CTAGCTGCTTTCTTTTGGCTGCTGGAGTTTCTGAAAATTTTGTGTTGCAGATTCTATTTG