Contig 004301:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS167D02Sequence491004301 (4)emb|CDP20806.1|2e-40unnamed protein product [Coffea canephora]
JMSF027N17Sequence636002319 (4)ref|XP_006366870.1|2e-35PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Sol757004301 (4)emb|CDP20806.1|9e-89unnamed protein product [Coffea canephora]
JMSF032B02Sequence707002319 (4)ref|XP_006366870.1|9e-25PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Sol762004301 (4)emb|CDP20806.1|8e-83unnamed protein product [Coffea canephora]
JMSF033B02Sequence219004301 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF027N17+ GGGACATGTTAATGAGAGCTTCCAG
rJMSF032B02+ TACGCGATAGTNATACTGGGGACATGTTAATGAGAGCTTCCAG
                      ____________________________________________________________
consensus TACGCGATAGTNATACTGGGGACATGTTAATGAGAGCTTCCAG
 
. : . : . : . : . : . :
rJMSF027N17+ CCTTTGGGTAATGATGAATAAAGAGACGAGGAAATTAGCAAAAATGGATGATGAGGTTCG
rJMSF032B02+ CC-TTNGGTAATGATGAATAAAGAGACGAGGAAATTAGCAAAAATGGATGATGAGGTTCG
                      ____________________________________________________________
consensus CCTTTGGGTAATGATGAATAAAGAGACGAGGAAATTAGCAAAAATGGATGATGAGGTTCG
 
. : . : . : . : . : . :
rJMSF027N17+ AGCTGAAATCGGAAGCTATTTTGTGGATGTGCCTCCTGTTATTGATGAAGACGGTAAGAG
rJMSF032B02+ AGCTGAAATCGGAAGCTATTTTGTGGATGTGCCTCCTGTTATTGATGAAGACGGTAAGAG
                      ____________________________________________________________
consensus AGCTGAAATCGGAAGCTATTTTGTGGATGTGCCTCCTGTTATTGATGAAGACGGTAAGAG
 
. : . : . : . : . : . :
rJMSF027N17+ GCTTCCAAAGCTCGATGATGAGAGAGCAGACTATGTTCGCACTGGGTTAACTCCAAAGTG
rJMSF032B02+ GCTTCCAAAGCTCGATGATGAGAGAGCAGACTATGTTCGCACTGGGTTAACTCCAAAGTG
                      ____________________________________________________________
consensus GCTTCCAAAGCTCGATGATGAGAGAGCAGACTATGTTCGCACTGGGTTAACTCCAAAGTG
 
. : . : . : . : . : . :
rJMSF027N17+ GAGTGATTTAGATGTGAACCAGCATGTTAATAATGTGAAATATATTGCCTGGATTCTTGA
JMFS167D02- GTGAAATATATTGCCTGGATTCTTGA
rJMSF032B02+ GAGTGATTTAGATGTGAACCAGCATGTTAATAATGTGAAATATATTGCCTGGATTCTTGA
                      ____________________________________________________________
consensus GAGTGATTTAGATGTGAACCAGCATGTTAATAATGTGAAATATATTGCCTGGATTCTTGA
 
. : . : . : . : . : . :
rJMSF027N17+ GAGTGCTCCTTTGCCAATCTTGGAGAGTCACGAGCTAGCTTCCATGACGTTGGAGTACAG
JMFS167D02- GAGTGCTCCTTTGCCAATCTTGGAGAGTCACGAGCTAGCTTCCATGACGTTGGAGTACAG
rJMSF032B02+ GAGTGCTCCTTTGCCAATCTTGGAGAGTCACGAGCTAGCTTCCATGACGTTGGAGTACAG
                      ____________________________________________________________
consensus GAGTGCTCCTTTGCCAATCTTGGAGAGTCACGAGCTAGCTTCCATGACGTTGGAGTACAG
 
. : . : . : . : . : . :
rJMSF027N17+ GCGGGAATGCAGGAAGGACAGCACGGTGCAATCCCTCACGTCTATTTTGGGCAACGACAT
JMFS167D02- GCGGGAATGCAGGAAGGACAGCACGGTGCAATCCCTCACGTCTATTTTGGGCAACGACAT
rJMSF032B02+ GCGGGAATGCAGGAAGGACAGCACGGTGCAATCCCTCACGTCTATTTTGGGCAACGACAT
                      ____________________________________________________________
consensus GCGGGAATGCAGGAAGGACAGCACGGTGCAATCCCTCACGTCTATTTTGGGCAACGACAT
 
. : . : . : . : . : . :
rJMSF027N17+ TGGCAATCTGGCCGATTCTGGGTCCATCGAGTGCCAGCATTTGCTTCGCCTCGAGGGCGG
JMFS167D02- TGGCAATCTGGCCGATTCTGGGTCCATCGAGTGCCAGCATTTGCTTCGCCTCGAGGGCGG
rJMSF033B02+ GAGGGCGG
rJMSF032B02+ TGGCAATCTGGCCGATTCTGGGTCCATCGAGTGCCAGCATTTGCTTCGCCTCGAGGGCGG
                      ____________________________________________________________
consensus TGGCAATCTGGCCGATTCTGGGTCCATCGAGTGCCAGCATTTGCTTCGCCTCGAGGGCGG
 
. : . : . : . : . : . :
rJMSF027N17+ TACTGAAATCGTGAAGGGAAGAACCGAGTGGAGGCCAAAATTAGCCAGCGGGTTTGGGAG
JMFS167D02- TACTGAAATCGTGAAGGGAAGAACCGAGTGGAGGCCAAAATTAGCCAGCGGGTTTGGGAG
rJMSF033B02+ TACNGAAATCNTGAAGGGAAGANCCGAGNGGAGGCCNAAATTANCCAGCGGGTTNGGGAG
rJMSF032B02+ TACTGAAATCGTGAAGGGAAGAACCGAGTGGAGGCCAAAATTAGCCAGCGGGTTTGGGAG
                      ____________________________________________________________
consensus TACTGAAATCGTGAAGGGAAGAACCGAGTGGAGGCCAAAATTAGCCAGCGGGTTTGGGAG
 
. : . : . : . : . : . :
rJMSF027N17+ CGTGGCCGAGCTCTCCACAGAAAGTGGCTAAGCTCGACGTTCTTCACAGCCGGACTCCAT
JMFS167D02- CGTGGCCGAGCTCTCCACAGAAAGTGGCTAAGCTCGACGTTCTTCACAGCCGGACTCCAT
rJMSF033B02+ CGTGGCCGAGCTCTCCNCNGAAAGNGGCTAAGCTTGACGTTCTTCACAGCCGGACTCCAN
rJMSF032B02+ CGTGGCCGAGCTCTCCACAGAAAGTGGCTAAGCTCGACGTTCTTCACAGCCGGACTCCAT
                      ____________________________________________________________
consensus CGTGGCCGAGCTCTCCACAGAAAGTGGCTAAGCTCGACGTTCTTCACAGCCGGACTCCAT
 
. : . : . : . : . : . :
rJMSF027N17+ GCAACAAGACGACACAAGTCCCCTGTACATAGAATCAATCTACTTGTGTTCATTAATATT
JMFS167D02- GCAACAAGACGACACAAGTCCCCTGTACATAGAATCAATCTACTTGTGTTCATTAATATT
rJMSF033B02+ GCAACAAGACGACACAAGTCCCCTGTACATCGAATCAATNTACTTGTGTTCANTAATATT
rJMSF032B02+ GCAACAAGACGACACAAGTCCCCTGTACATAGAATCAATCTACTTGTGTTCATTAATATT
                      ____________________________________________________________
consensus GCAACAAGACGACACAAGTCCCCTGTACATAGAATCAATCTACTTGTGTTCATTAATATT
 
. : . : . : . : . : . :
rJMSF027N17+ CTCCGGCCTTATCTTCGTATTTTTGCTTGTATTTTTGTTGTTGTGTTTTTTGTCATTTGG
JMFS167D02- CTCCGGCCTTATCTTCGTATTTTTGCTTGTATTTTTGTTGTTGTGTTTTTTGTCATTTGG
rJMSF033B02+ CTCCGGCCTTATNTTCGTATNTTTGCTTG
rJMSF032B02+ CTCCGGCCTTATCTTCGTATTTTTGCTTGTATTTTTGTTGTTGTGTTTTTTGTCATTTGG
                      ____________________________________________________________
consensus CTCCGGCCTTATCTTCGTATTTTTGCTTGTATTTTTGTTGTTGTGTTTTTTGTCATTTGG
 
. : . : . : . : . : . :
rJMSF027N17+ ATACATAGAGAGCAGTTGTATGTAGAGCTTGCCGTTTGTTCTTTCCTCTTCATGGATTAC
JMFS167D02- ATACATAGAGAGCAGTTGTATGTAGAGCTTGCCGTTTGTTCTTTC
rJMSF032B02+ ATACATAGAGAGCAGTTGTATGTAGAGCTTGCCGTTTGTTCTTTCCTCTTCATGGATTAC
                      ____________________________________________________________
consensus ATACATAGAGAGCAGTTGTATGTAGAGCTTGCCGTTTGTTCTTTCCTCTTCATGGATTAC