| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF051M20 | Sequence | 503 | 004296 (8) | ref|XP_009592116.1| | 7e-59 | PREDICTED: germin-like protein 11-1 [Nicotiana tomentosiformis] | 500 | 004296 (8) | ref|XP_009761821.1| | 7e-33 | PREDICTED: germin-like protein 11-1 [Nicotiana sylvestris] |
| JMSF017H11 | Sequence | 475 | 004296 (8) | ref|XP_009592116.1| | 9e-58 | PREDICTED: germin-like protein 11-1 [Nicotiana tomentosiformis] | 740 | 004296 (8) | emb|CDO98279.1| | 5e-90 | unnamed protein product [Coffea canephora] |
| JMSF031A05 | Sequence | 621 | 005315 (2) | 729 | 004296 (8) | ref|XP_009592116.1| | 5e-55 | PREDICTED: germin-like protein 11-1 [Nicotiana tomentosiformis] | |||
| JMSF046G21 | Sequence | 741 | 004296 (8) | ref|XP_009592116.1| | 3e-93 | PREDICTED: germin-like protein 11-1 [Nicotiana tomentosiformis] | 698 | 004296 (8) | emb|CDO98279.1| | 2e-55 | unnamed protein product [Coffea canephora] |
| JMSF051O07 | Sequence | 673 | 005315 (2) | 710 | 004296 (8) | ref|XP_009592116.1| | 2e-93 | PREDICTED: germin-like protein 11-1 [Nicotiana tomentosiformis] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF046G21- CCCAACTTTTTTTTTCTGTCAAGAATAATTCCCTAAAGGTGCTTTATTTGTTATAGTTGA
____________________________________________________________
consensus CCCAACTTTTTTTTTCTGTCAAGAATAATTCCCTAAAGGTGCTTTATTTGTTATAGTTGA
. : . : . : . : . : . :
rJMFF051M20- A
rJMSF046G21- AAGCATTCATTAATATATTACTCAGTGTTGTGATGTATAACTTAATAAACATTGTAATTA
____________________________________________________________
consensus AAGCATTCATTAATATATTACTCAGTGTTGTGATGTATAACTTAATAAACATTGTAATTA
. : . : . : . : . : . :
rJMFF051M20- GAAAAGGAAAGAGAAGATTTTATTTGAAATGTGGTGTTTGGAATTCCCCATAATATATAT
rJMSF046G21- GAAAAGGAAAGAGAAGATTTTATTTGAAATGTGGTGTTTGGAATTCCCCATAATATATAT
rJMSF017H11- CCCATAATATATAT
____________________________________________________________
consensus GAAAAGGAAAGAGAAGATTTTATTTGAAATGTGGTGTTTGGAATTCCCCATAATATATAT
. : . : . : . : . : . :
rJMFF051M20- ATTCAGTAACCAATCCACCAGATATCACTGAAGTAGCTTCAAATTTGCAGATGCCATGGG
rJMSF046G21- ATTCAGTAACCAATCCACCAGATATCACTGAAGTAGCTTCAAATTTGCAGATGCCATGGG
rJMSF017H11- ATTCAGTAACCAATCCACCAGATATCACTGAAGTAGCTTCAAATTTGCAGATGCCATGGG
____________________________________________________________
consensus ATTCAGTAACCAATCCACCAGATATCACTGAAGTAGCTTCAAATTTGCAGATGCCATGGG
. : . : . : . : . : . :
rJMFF051M20- TTGCTGGGAAGGTCGCCATAGGAAAGCAATGTTGCGTTATCAATCCGGTCAACATCCAAG
rJMSF046G21- TTGCTGGGAAGGTCGCCATAGGAAAGCAATGTTGCGTTATCAATCCGGTCAACATCCAAG
rJMSF017H11- TTGCTGGGAAGGTCGCCATAGGAAAGCAATGTTGCGTTATCAATCCGGTCAACATCCAAG
JMSF046G21+ CCATAGGAAAGCAATGTTGCGTTATCAATCCGGTCAACATCCAAG
rJMSF051O07+ GGTCAACATCCAAG
____________________________________________________________
consensus TTGCTGGGAAGGTCGCCATAGGAAAGCAATGTTGCGTTATCAATCCGGTCAACATCCAAG
. : . : . : . : . : . :
rJMFF051M20- TTCGAAAGAGACTTCAATTTCTTGATCAGCGTTTTCATGGAATCTGAATCATCATTATCA
rJMSF046G21- TTCGAAAGAGACTTCAATTTCTTGATCAGCGTTTTCATGGAATCTGAATCATCATTATCA
rJMSF017H11- TTCGAAAGAGACTTCAATTTCTTGATCAGCGTTTTCATGGAATCTGAATCATCATTATCA
JMSF046G21+ TTCGAAAGAGACTTCAATTTCTTGATCAGCGTTTTCATGGAATCTGAATCATCATTATCA
rJMSF051O07+ TTCGAAAGAGACTTCAATTTCTTGATCAGCGTTTTCATGGAATCTGAATCATCATTATCA
____________________________________________________________
consensus TTCGAAAGAGACTTCAATTTCTTGATCAGCGTTTTCATGGAATCTGAATCATCATTATCA
. : . : . : . : . : . :
rJMFF051M20- GGTGTGAACTGGGCATCCGAGATGCCCACAACGCCAGGGTTCTGGCTGCTCAGAACGGAG
rJMSF046G21- GGTGTGAACTGGGCATCCGAGATGCCCACAACGCCAGGGTTCTGGCTGCTCAGAACGGAG
rJMSF017H11- GGTGTGAACTGGGCATCCGAGATGCCCACAACGCCAGGGTTCTGGCTGCTCAGAACGGAG
JMSF046G21+ GGTGTGAACTGGGCATCCGAGATGCCCACAACGCCAGGGTTCTGGCTGCTCAGAACGGAG
rJMSF051O07+ GGTGTGAACTGGGCATCCGAGATGCCCACAACGCCAGGGTTCTGGCTGCTCAGAACGGAG
____________________________________________________________
consensus GGTGTGAACTGGGCATCCGAGATGCCCACAACGCCAGGGTTCTGGCTGCTCAGAACGGAG
. : . : . : . : . : . :
rJMFF051M20- AAAACCGTGGCAAACTCGAAGCCGATGTTGTAGAAATAGTGCAGAAGCCCTCTAGGGAAC
rJMSF046G21- AAAACCGTGGCAAACTCGAAGCCGATGTTGTAGAAATAGTGCAGAAGCCCTCTAGGGAAC
rJMSF017H11- AAAACCGTGGCAAACTCGAAGCCGATGTTGTAGAAATAGTGCAGAAGCCCTCTAGGGAAC
JMSF046G21+ AAAACCGTGGCAAACTCGAAGCCGATGTTGTAGAAATAGTGCAGAAGCCCTCTAGGGAAC
rJMSF051O07+ AAAACCGTGGCAAACTCGAAGCCGATGTTGTAGAAATAGTGCAGAAGCCCTCTAGGGAAC
____________________________________________________________
consensus AAAACCGTGGCAAACTCGAAGCCGATGTTGTAGAAATAGTGCAGAAGCCCTCTAGGGAAC
. : . : . : . : . : . :
rJMFF051M20- ACGAAAACATCACCTTCGTTGAGAATCTTTTGGAACACTCTACCTTTGGTGTCCACGAAC
rJMSF046G21- ACGAAAACATCACCTTCGTTGAGAATCTTTTGGAACACTCTACCTTTGGTGTCCACGAAC
rJMSF017H11- ACGAAAACATCACCTTCGTTGAGAATCTTTTGGAACACTCTACCTTTGGTGTCCACGAAC
JMSF046G21+ ACGAAAACATCACCTTCGTTGAGAATCTTTTGGAACACTCTACCTTTGGTGTCCACGAAC
JMFF051M20+ CGAAAACATCACCTTCGTGGAGAATCTTTTGGAACACTCTACC-TTGGTGTCCACGAAC
rJMSF051O07+ ACGAAAACATCACCTTCGTTGAGAATCTTTTGGAACACTCTACCTTTGGTGTCCACGAAC
JMSF017H11+ TGGTGTCCACGAAC
rJMSF031A05+ TCCACGAAC
____________________________________________________________
consensus ACGAAAACATCACCTTCGTTGAGAATCTTTTGGAACACTCTACCTTTGGTGTCCACGAAC
. : . : . : . : . : . :
rJMFF051M20- CCGGNCACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
rJMSF046G21- CCGGCAACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
rJMSF017H11- CCGGCAACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
JMSF046G21+ CCGGCAACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
JMFF051M20+ CCGGCAACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
rJMSF051O07+ CCGGCAACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
JMSF017H11+ CCGGCAACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
rJMSF031A05+ CCGGCAACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
____________________________________________________________
consensus CCGGCAACCACCCTGCCTGAGCTGACAAACACCATCTCAGAAGCCCTCGGGTTAGAATGA
. : . : . : . : . : . :
rJMFF051M20- GGCAACACCAGGCCATCCA
rJMSF046G21- GGCAACACCAGGCCATCCACTTCAAAGTCGGTCCTTGCAACCGATAAGCCCAGAGTGTTG
rJMSF017H11- GGCAACACCAGGCCATCCACTTCAAAGTCGGTCCTTGCAACCGATAAGCCCAGAGTGTTG
JMSF046G21+ GGCAACACCAGGCCATCCACTTCAAAGTCGGTCCTTGCAACCGATAAGCCCAGAGTGTTG
JMFF051M20+ GGCAACACCAGGCCATCCACTTCAAAGTCGGTCCTTGCAACCGATAAGCCCAGAGTGTTG
rJMSF051O07+ GGCAACACCAGGCCATCCACTTCAAAGTCGGTCCTTGCAACCGATAAGCCCAGAGTGTTG
JMSF017H11+ GGCAACACCAGGCCATCCACTTCAAAGTCGGTCCTTGCAACCGATAAGCCCAGAGTGTTG
rJMSF031A05+ GGCAACACCAGGCCATCCACTTCAAAGTCGGTCCTTGCAACCGATAAGCCCAGAGTGTTG
____________________________________________________________
consensus GGCAACACCAGGCCATCCACTTCAAAGTCGGTCCTTGCAACCGATAAGCCCAGAGTGTTG
. : . : . : . : . : . :
rJMSF046G21- AGGCCCGGGAACTTTGCAGCAGTGAGTATGTTTGTCGA
rJMSF017H11- AGGCCCGGGAACTTTGCAGCAGTGAGTATGTTTGTCGAAGACCCCAAGAAGTTGTCCGTG
JMSF046G21+ AGGCCCGGGAACTTTGCAGCAGTGAGTATGTTTGTCGAAGACCCCAAGAAGTTGTCCGTG
JMFF051M20+ AGGCCCGGGAACTTTGCAGCAGTGAGTATGTTTGTCGAAGACCCCAAGAAGTTGTCCGTG
rJMSF051O07+ AGGCCCGGGAACTTTGCAGCAGTGAGTATGTTTGTCGAAGACCCCAAGAAGTTGTCCGTG
JMSF017H11+ AGGCCCGGGAACTTTGCAGCAGTGAGTATGTTTGTCGAAGACCCCAAGAAGTTGTCCGTG
rJMSF031A05+ AGGCCCGGGAACTTTGCAGCAGTGAGTATGTTTGTCGAAGACCCCAAGAAGTTGTCCGTG
____________________________________________________________
consensus AGGCCCGGGAACTTTGCAGCAGTGAGTATGTTTGTCGAAGACCCCAAGAAGTTGTCCGTG
. : . : . : . : . : . :
rJMSF017H11- TCGCCTTTCTTGCTCAAAAGTGAGCTTTTAAAATCCGAAGCTATAACCTCAGCTGGATTC
JMSF046G21+ TCGCCTTTCTTGCTCAAAAGTGAGCTTTTAAAATCCGAAGCTATAACCTCAGCTGGATTC
JMFF051M20+ TCGCCTTTCTTGCTCAAAAGTGAGCTTTTAAAATCCGAAGCTATAACCTCAGCTGGATTC
rJMSF051O07+ TCGCCTTTCTTGCTCAAAAGTGAGCTTTTAAAATCCGAAGCTATAACCTCAGCTGGATTC
JMSF017H11+ TCGCCTTTCTTGCTCAAAAGTGAGCTTTTAAAATCCGAAGCTATAACCTCAGCTGGATTC
rJMSF031A05+ TCGCCTTTCTTGCTCAAAAGTGAGCTTTTAAAATCCGAAGCTATAACCTCAGCTGGATTC
____________________________________________________________
consensus TCGCCTTTCTTGCTCAAAAGTGAGCTTTTAAAATCCGAAGCTATAACCTCAGCTGGATTC
. : . : . : . : . : . :
rJMSF017H11- TTGCACGGAAAACCATTTACGAAGATGTTTTTGCGAGCCGTGTCTGCTGGGCAGGTATCC
JMSF046G21+ TTGCACGGAAAACCATTTACGAAGATGTTTTTGCGAGCCGTGTCTGCTGGGCAGGTATCC
JMFF051M20+ TTGCACGGAAAACCATTTACGAAGATGTTTTTGCGAGCCGTGTCTGCTGGGCAGGTATCC
rJMSF051O07+ TTGCACGGAAAACCATTTACGAAGATGTTTTTGCGAGCCGTGTCTGCTGGGCAGGTATCC
JMSF017H11+ TTGCACGGAAAACCATTTACGAAGATGTTTTTGCGAGCCGTGTCTGCTGGGCAGGTATCC
rJMSF031A05+ TTGCACGGAAAACCATTTACGAAGATGTTTTTGCGAGCCGTGTCTGCTGGGCAGGTATCC
____________________________________________________________
consensus TTGCACGGAAAACCATTTACGAAGATGTTTTTGCGAGCCGTGTCTGCTGGGCAGGTATCC
. : . : . : . : . : . :
rJMSF017H11- TGGAGATTATCTGCATCCTTTGCCCATATAAGTTTGCTGCAAATGCATGCACATAGTATC
JMSF046G21+ TGGAGATTATCTGCATCCTTTGCCCATATAAGTTTGCTGCAAATGCATGCACATAGTATC
JMFF051M20+ TGGAGATTATCTGCATCCTTTGCCCATATAAGTTTGCTGCAAATGCATGCACATAGTATC
rJMSF051O07+ TGGAGATTATCTGCATCCTTTGCCCATATAAGTTTGCTGCAAATGCATGCACATAGTATC
JMSF017H11+ TGGAGATTATCTGCATCCTTTGCCCATATAAGTTTGCTGCAAATGCATGCACATAGTATC
rJMSF031A05+ TGGAGATTATCTGCATCCTTTGCCCATATAAGTTTGCTGCAAATGCATGCACATAGTATC
____________________________________________________________
consensus TGGAGATTATCTGCATCCTTTGCCCATATAAGTTTGCTGCAAATGCATGCACATAGTATC
. : . : . : . : . : . :
rJMSF017H11- AAGACA
JMSF046G21+ AAGACAATGCCAAACAAAACAGAGGCCTTCATACTATTTTCTATTTATGCTTTCTGAATA
JMFF051M20+ AAGACAATGCCAAACAAAACAGAGGCCTTCATACTATTTTCTATTTATGCTTTCTGAATA
rJMSF051O07+ AAGACAATGCCAAACAAAACAGAGGCCTTCATACTATTTTCTATTTATGCTTTCTGAATA
JMSF017H11+ AAGACAATGCCAAACAAAACAGAGGCCTTCATACTATTTTCTATTTATGCTTTCTGAATA
rJMSF031A05+ AAGACAATGCCAAACAAAACAGAGGCCTTCATACTATTTTCTATTTATGCTTTCTGAATA
____________________________________________________________
consensus AAGACAATGCCAAACAAAACAGAGGCCTTCATACTATTTTCTATTTATGCTTTCTGAATA
. : . : . : . : . : . :
JMSF046G21+ GACAAACTTAAGTGTGTGTACAATCAC
JMFF051M20+ GACAAACTTAAGTGTGTGTACAATC
rJMSF051O07+ GACAAACTTAAGTGTGTGTACAATCACAGTCATCTA
JMSF017H11+ GACAAACTTAAGTGTGTGTACAATCACAGTCATCTA
rJMSF031A05+ GACAAACTTAAGTGTGTGTACAATCACAGTCATCTACTCTACCAGATGGGGGACTCTATA
____________________________________________________________
consensus GACAAACTTAAGTGTGTGTACAATCACAGTCATCTACTCTACCAGATGGGGGACTCTATA
. : . : . : . : . : . :
rJMSF031A05+ TATATATATATAAAGGTTCTGAAGTATGCATAGTTGTGAAGTAATAATATAAAGCTTGGA
____________________________________________________________
consensus TATATATATATAAAGGTTCTGAAGTATGCATAGTTGTGAAGTAATAATATAAAGCTTGGA
. : . : . : . : . : . :
rJMSF031A05+ GTCCACTTCACTGAATTCCTAAGTGGATTTTGCTGAAGCTTGAAAGAAACACAATGCTTA
____________________________________________________________
consensus GTCCACTTCACTGAATTCCTAAGTGGATTTTGCTGAAGCTTGAAAGAAACACAATGCTTA
. : . : . : . : . : . :
rJMSF031A05+ CAAAGAAAGATGAGCTGCTCTTATCTGGAAGGCAGGATGTCCTTGTTCTATCCTATGGAC
____________________________________________________________
consensus CAAAGAAAGATGAGCTGCTCTTATCTGGAAGGCAGGATGTCCTTGTTCTATCCTATGGAC
. : . : . : . : . : . :
rJMSF031A05+ ATGTTTTTCTCAATGTAGAATTCCCAATAATATTGTTCAAATGCAGGGATTTTGGACTTT
____________________________________________________________
consensus ATGTTTTTCTCAATGTAGAATTCCCAATAATATTGTTCAAATGCAGGGATTTTGGACTTT