Contig 004293:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN029M07Sequence657004293 (5)ref|XP_009783910.1|2e-109PREDICTED: actin-related protein 7 isoform X1 [Nicotiana sylvestris]
JMSF013D10Sequence231005156 (6)795004293 (5)ref|XP_004250065.1|3e-117PREDICTED: actin-related protein 7 [Solanum lycopersicum]
JMSF030I22Sequence660005156 (6)emb|CDP04578.1|2e-34unnamed protein product [Coffea canephora]700004293 (5)gb|KDO83435.1|5e-98hypothetical protein CISIN_1g017944mg [Citrus sinensis]
JMSF039F01Sequence623005156 (6)emb|CDP04578.1|1e-30unnamed protein product [Coffea canephora]928004293 (5)ref|XP_004250065.1|1e-169PREDICTED: actin-related protein 7 [Solanum lycopersicum]
JMSF049J09Sequence677005156 (6)emb|CDP04578.1|1e-44unnamed protein product [Coffea canephora]765004293 (5)ref|XP_004250065.1|2e-127PREDICTED: actin-related protein 7 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039F01+ CAGGGAACAATTAGTACAGCTGATGTTTGAGACATTTAACATCTCAGGG
                      ____________________________________________________________
consensus CAGGGAACAATTAGTACAGCTGATGTTTGAGACATTTAACATCTCAGGG
 
. : . : . : . : . : . :
rJMSF039F01+ TTTTATGCCTCTGAGCAAGCAGTGCTGTCACTCTATGCTGTTGGGCGCATATCAGGATGC
                      ____________________________________________________________
consensus TTTTATGCCTCTGAGCAAGCAGTGCTGTCACTCTATGCTGTTGGGCGCATATCAGGATGC
 
. : . : . : . : . : . :
rJMSF049J09+ GTTCAG
rJMSF039F01+ ACAGTTGACATTGGTCATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCAG
                      ____________________________________________________________
consensus ACAGTTGACATTGGTCATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCAG
 
. : . : . : . : . : . :
rJMSF049J09+ CACATAGCTTCCAGAAGGTTGGAACTTGGCGGTGTAGATCTGACAAAGCTGCTGGCAGAA
rJMSF039F01+ CACATAGCTTCCAGAAGGTTGGAACTTGGCGGTGTAGATCTGACAAAGCTGCTGGCAGAA
rJMSF013D10+ TGACAAAGCTGCTGGCAGAA
                      ____________________________________________________________
consensus CACATAGCTTCCAGAAGGTTGGAACTTGGCGGTGTAGATCTGACAAAGCTGCTGGCAGAA
 
. : . : . : . : . : . :
rJMSF049J09+ AAGCTCAGTAAATCAAATCCAATGGTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
JMFN029M07- GTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
rJMSF039F01+ AAGCTCAGTAAATCAAATCCAATGGTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
rJMSF013D10+ AAGCTCAGTAAATCAAATCCAATGGTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
                      ____________________________________________________________
consensus AAGCTCAGTAAATCAAATCCAATGGTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
 
. : . : . : . : . : . :
rJMSF049J09+ GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
JMFN029M07- GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
rJMSF039F01+ GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
rJMSF013D10+ GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
rJMSF030I22+ CTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
                      ____________________________________________________________
consensus GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
 
. : . : . : . : . : . :
rJMSF049J09+ CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
JMFN029M07- CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
rJMSF039F01+ CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
rJMSF013D10+ CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
rJMSF030I22+ CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
                      ____________________________________________________________
consensus CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
 
. : . : . : . : . : . :
rJMSF049J09+ ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
JMFN029M07- ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
rJMSF039F01+ ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
rJMSF013D10+ ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
rJMSF030I22+ ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
                      ____________________________________________________________
consensus ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
 
. : . : . : . : . : . :
rJMSF049J09+ GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
JMFN029M07- GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
rJMSF039F01+ GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
rJMSF013D10+ GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAG
rJMSF030I22+ GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
                      ____________________________________________________________
consensus GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
 
. : . : . : . : . : . :
rJMSF049J09+ AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
JMFN029M07- AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
rJMSF039F01+ AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
rJMSF013D10+ AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
rJMSF030I22+ AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
                      ____________________________________________________________
consensus AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
 
. : . : . : . : . : . :
rJMSF049J09+ GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCGGGAGTACATG
JMFN029M07- GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCCGGAGTACATG
rJMSF039F01+ GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCGGGAGTACATG
rJMSF013D10+ GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCCGGAGTACATG
rJMSF030I22+ GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCCGGAGTACATG
                      ____________________________________________________________
consensus GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCCGGAGTACATG
 
. : . : . : . : . : . :
rJMSF049J09+ CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
JMFN029M07- CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
rJMSF039F01+ CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
rJMSF013D10+ CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
rJMSF030I22+ CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
                      ____________________________________________________________
consensus CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
 
. : . : . : . : . : . :
rJMSF049J09+ TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
JMFN029M07- TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
rJMSF039F01+ TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
rJMSF013D10+ TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
rJMSF030I22+ TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
                      ____________________________________________________________
consensus TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
 
. : . : . : . : . : . :
rJMSF049J09+ CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
JMFN029M07- CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
rJMSF039F01+ CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
rJMSF013D10+ CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
rJMSF030I22+ CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
                      ____________________________________________________________
consensus CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
 
. : . : . : . : . : . :
rJMSF049J09+ TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
JMFN029M07- TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
rJMSF039F01+ TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
rJMSF013D10+ TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
rJMSF030I22+ TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
                      ____________________________________________________________
consensus TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
 
. : . : . : . : . : . :
rJMSF049J09+ TTTGTTTTCGATCTTGTTATGTTCCTAGGT
JMFN029M07- TTTGTTTTCGATCTTGTTATG
rJMSF039F01+ TTTGTTTTCGATCTTGTTATGTTCCTAGGT
rJMSF013D10+ TTTGTTTTCGATCTTGTTATGTTCCTAGGTTGCAGCAATACTAATATCTAAATGTTACGT
rJMSF030I22+ TTTGTTTTCGATCTTGTTATGTTCCTAGGTTGCAGCAATACTAATATCTAAATGTTACGT
                      ____________________________________________________________
consensus TTTGTTTTCGATCTTGTTATGTTCCTAGGTTGCAGCAATACTAATATCTAAATGTTACGT
 
. : . : . : . : . : . :
rJMSF013D10+ AGTACTAGTTGGTATGGAAGCTAACCAGCCGATACTGAAACTTTTTGCATGATTT
rJMSF030I22+ AGTACTAGTTGGTATGGAAGCTAA-CAGCCGATACTGAAACTTTTTGCATGATTTATGCT
                      ____________________________________________________________
consensus AGTACTAGTTGGTATGGAAGCTAACCAGCCGATACTGAAACTTTTTGCATGATTTATGCT