Contig 004285:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005G03Sequence445018395ref|XP_004248412.1|2e-17PREDICTED: coproporphyrinogen-III oxidase 1, chloroplastic [Solanum lycopersicu742004285 (3)emb|CAN76809.1|9e-137hypothetical protein VITISV_044041 [Vitis vinifera]
JMSF028N05Sequence692023211ref|XP_011096874.1|6e-84PREDICTED: coproporphyrinogen-III oxidase 1, chloroplastic [Sesamum indicum]741004285 (3)dbj|BAF63480.1|7e-50coproporphyrinogen oxidase [Potamogeton distinctus]
JMSF035K22Sequence709017891ref|XP_011096874.1|3e-87PREDICTED: coproporphyrinogen-III oxidase 1, chloroplastic [Sesamum indicum]667004285 (3)ref|XP_006429803.1|2e-88hypothetical protein CICLE_v10011903mg [Citrus clementina] gb|ESR43043.1| hypoth

Alignment

This contig is upended


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rJMFF005G03+                             TTCAACTATCGGTATTTTGAAACCGATGCTCCAAAAGATGC
                      ____________________________________________________________
consensus                                TTCAACTATCGGTATTTTGAAACCGATGCTCCAAAAGATGC
 
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rJMFF005G03+          TCCTGGAGCACCAAGGCAGTGGTGGTTTGGTGGTGGTACGGATTTGACACCTTCTTACAT
                      ____________________________________________________________
consensus             TCCTGGAGCACCAAGGCAGTGGTGGTTTGGTGGTGGTACGGATTTGACACCTTCTTACAT
 
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rJMFF005G03+          CTTTGATGAGGACGTAAAACACTTCCATTCGGTTCAAAAAAGTGCTTGTGACAAGTTTGA
                      ____________________________________________________________
consensus             CTTTGATGAGGACGTAAAACACTTCCATTCGGTTCAAAAAAGTGCTTGTGACAAGTTTGA
 
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rJMFF005G03+          TCCCAGCTTCTATCCTCGATTCAAGAAATGGTGTGATGATTATTTTTATATTAAGCACCG
rJMSF035K22+                      TCCTCGATTCAAGAAATGGTGTGATGATTATTTTTACATTAAGCACCG
                      ____________________________________________________________
consensus             TCCCAGCTTCTATCCTCGATTCAAGAAATGGTGTGATGATTATTTTTATATTAAGCACCG
 
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rJMFF005G03+          TGGAGAGAGAAGAGGCCTTGGAGGAATTTTCTTTGATGATCTAAATAACTATGATCAAGA
rJMSF035K22+          TGGTGAGAGGCGTGGTCTTGGAGGAATATTTTTTGATGATTTAAATAACTATGACCAAGA
                      ____________________________________________________________
consensus             TGGTGAGAGGCGTGGTCTTGGAGGAATTTTTTTTGATGATTTAAATAACTATGATCAAGA
 
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rJMFF005G03+          GATGCTTCTTTCCTTTGCTACAGAGTGCGCGAATTCCGTCATCCCTGCATATATACCAAT
rJMSF035K22+          TATGCTTCTTTCCTTTGCTACAGAGTGTGCAAATTCTGTTATTCCTGCATATATACCCAT
rJMSF028N05+                                                 TATTCCTGCATATATACCCNT
                      ____________________________________________________________
consensus             TATGCTTCTTTCCTTTGCTACAGAGTGTGCGAATTCTGTTATTCCTGCATATATACCCAT
 
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rJMFF005G03+          CGTAGAGAAGAGGAAGGATACACCCTTCACAGACACTCACAAGGAATGGCAACAACTACG
rJMSF035K22+          TATAGAGAAGAGAAAGGATACGCCATTCACAGCCAGTCACAAGGAATGGCAACAAGTACG
rJMSF028N05+          TATAGAGAAGAGAAAGGATACGCCATTCACAGCCAGTCACAAGGAATGGCAACAAGTACG
                      ____________________________________________________________
consensus             TATAGAGAAGAGAAAGGATACGCCATTCACAGCCAGTCACAAGGAATGGCAACAAGTACG
 
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rJMFF005G03+          TAGGGGGCGCTACGTAGAATTCAACCTGGTTTATGACCGTGGAACAACATTTGGACTAAA
rJMSF035K22+          TAGGGGACGCTATGTGGAATTCAACTTGGTCTACGATCGTGGAACTACATTTGGACTGAA
rJMSF028N05+          TAGGGGACGCTATGTGGAATTCAACTTGGTCTACGATCGTGGAACTACATTTGGACTGAA
                      ____________________________________________________________
consensus             TAGGGGACGCTATGTGGAATTCAACTTGGTCTACGATCGTGGAACTACATTTGGACTGAA
 
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rJMFF005G03+          GACCGGAGGCCGGATAGAGAGTATTCTCGTTTCTCTTCCATTAACTGCACGATGGGAGTA
rJMSF035K22+          GACAGGTGGTCGGATAGAGAGCATCCTTGTTTCACTTCCACTAACTGCTAGATGGGAATA
rJMSF028N05+          GACAGGTGGTCGGATAGAGAGCATCCTTGTTTCACTTCCACTAACTGCTAGATGGGAATA
                      ____________________________________________________________
consensus             GACAGGTGGTCGGATAGAGAGCATCCTTGTTTCACTTCCACTAACTGCTAGATGGGAATA
 
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rJMFF005G03+          CACCCACCAACCAGAAGAGGGGAGTGAAGAATGGCGGCTATTGGATGCTTGTATCAACCC
rJMSF035K22+          TGGCCATCAACCAGCAGAGGGGACTGAAGAATGGCGACTATTGGATGCATGTATCAACCC
rJMSF028N05+          TGGCCATCAACCAGCAGAGGGGACTGAAGAATGGCGACTATTGGATGCATGTATCAACCC
                      ____________________________________________________________
consensus             TGGCCATCAACCAGCAGAGGGGACTGAAGAATGGCGACTATTGGATGCATGTATCAACCC
 
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rJMFF005G03+          AAAGGATTGGATCTGA                                            
rJMSF035K22+          TAAGGAATGGATCTGAATGCTTCAAAACATTTTGGTGTAGGT                  
rJMSF028N05+          TAAGGAATGGATCTGAATGCTTCAAAACATTTTGGTGTAGGTTCAAACTCGGTGCTGTTT
                      ____________________________________________________________
consensus             TAAGGAATGGATCTGAATGCTTCAAAACATTTTGGTGTAGGTTCAAACTCGGTGCTGTTT
 
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rJMSF028N05+          GCATCTTTGAAACCAAGAACAGATCGAGCAAACTCAATTACTGCGATCTGCATTCCTAGA
                      ____________________________________________________________
consensus             GCATCTTTGAAACCAAGAACAGATCGAGCAAACTCAATTACTGCGATCTGCATTCCTAGA
 
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rJMSF028N05+          CATATTCCAAGGCATTCCTATAATTATCAGGACTCTGCAAATAGGAAATGGTTATGAAAC
                      ____________________________________________________________
consensus             CATATTCCAAGGCATTCCTATAATTATCAGGACTCTGCAAATAGGAAATGGTTATGAAAC
 
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rJMSF028N05+          TTGACAGATCATAAAGGAACGATTGAAACTGAGGTAGATAAGGTATCTGAAAATACCTCC
                      ____________________________________________________________
consensus             TTGACAGATCATAAAGGAACGATTGAAACTGAGGTAGATAAGGTATCTGAAAATACCTCC
 
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rJMSF028N05+          TTTTCGGTAGCCTCTTCAAGGTCTCCAGCTGGAACCCAATCTATACAAAGTTTCCTGTGG
                      ____________________________________________________________
consensus             TTTTCGGTAGCCTCTTCAAGGTCTCCAGCTGGAACCCAATCTATACAAAGTTTCCTGTGG
 
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rJMSF028N05+          CAAGCAACAGAAGCATGCAAAAGAGCCTGCAAACAATTTTTAATGTTTTATATATTGACA
                      ____________________________________________________________
consensus             CAAGCAACAGAAGCATGCAAAAGAGCCTGCAAACAATTTTTAATGTTTTATATATTGACA
 
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rJMSF028N05+          GAAGAATGAGAAAATATATGGAAGTAAACATTTCCTCAAATGTTTGCCAACTAAAAGGAA
                      ____________________________________________________________
consensus             GAAGAATGAGAAAATATATGGAAGTAAACATTTCCTCAAATGTTTGCCAACTAAAAGGAA
 
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rJMSF028N05+          GATTTAAAAATAGACAGTAGCAGTATCAACCACAAAACAATCTAAATTAGAGTGTTTGTA
                      ____________________________________________________________
consensus             GATTTAAAAATAGACAGTAGCAGTATCAACCACAAAACAATCTAAATTAGAGTGTTTGTA