Contig 004281:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022F08Sequence616009101 (3)ref|XP_002274030.1|3e-20PREDICTED: mucin-17 [Vitis vinifera] emb|CBI25498.3| unnamed protein product [Vi654004281 (2)gb|KDO69021.1|4e-53hypothetical protein CISIN_1g026936mg [Citrus sinensis]
JMSF027N19Sequence664016797ref|XP_011035974.1|1e-41PREDICTED: mucin-5AC-like [Populus euphratica]760004281 (2)ref|XP_009603323.1|3e-65PREDICTED: mucin-5B-like isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022F08+ CCAGNTATG
rJMSF027N19+ AATACATAGCAGTGGAAGCGCTGNTCCCATTCCAGCTATG
                      ____________________________________________________________
consensus AATACATAGCAGTGGAAGCGCTGNTCCCATTCCAGCTATG
 
. : . : . : . : . : . :
rJMSF022F08+ AGCCGGTTACATGCTAAAGNTAATGACAATGTGAGCCCTGTTGTGATTGGAACTAAGATG
rJMSF027N19+ AGCCGGTTACATGCTAAAGCTAATGACAATGTGAGCCCTGTTGTGATTGGAACTAAGATG
                      ____________________________________________________________
consensus AGCCGGTTACATGCTAAAGCTAATGACAATGTGAGCCCTGTTGTGATTGGAACTAAGATG
 
. : . : . : . : . : . :
rJMSF022F08+ GTTGAAAGAGTGATAAATATGCGGAAATTGGCTCCGCCAAAACAAGAGAATAAACATTCC
rJMSF027N19+ GTTGAAAGAGTGATAAATATGCGGAAATTGGCTCCGCCAAAACAAGAGAATAAACATTCC
                      ____________________________________________________________
consensus GTTGAAAGAGTGATAAATATGCGGAAATTGGCTCCGCCAAAACAAGAGAATAAACATTCC
 
. : . : . : . : . : . :
rJMSF022F08+ CCGAATAGTAATTGGTCTGCCAAGTCCTCATCACNTGNCAGCTCGGGCTNTGGAAGAAAT
rJMSF027N19+ CCGAATAGTAATTTGTCTGCCAAGTCCTCATCACCTGACAGCTCGGGCTTTGGAAGAAAT
                      ____________________________________________________________
consensus CCGAATAGTAATTTGTCTGCCAAGTCCTCATCACCTGACAGCTCGGGCTTTGGAAGAAAT
 
. : . : . : . : . : . :
rJMSF022F08+ CTCTNTNAAAAGTCNTNGGATATGGCCNTTAGGCATATGGATATAAGGCGAACAATTCCA
rJMSF027N19+ CTCTCTAAAAAGTCTTTGGATATGGCCATTAGGCATATGGATATAAGGCGAACAATTCCA
                      ____________________________________________________________
consensus CTCTCTAAAAAGTCTTTGGATATGGCCATTAGGCATATGGATATAAGGCGAACAATTCCA
 
. : . : . : . : . : . :
rJMSF022F08+ GGTAATCTNCGACCATTGATGGCTAATATTCCAGCATCATCTATGTACAGTGTGAGAACA
rJMSF027N19+ GGTAATCTACGACCATTGATGGCTAATATTCCAGCATCATCTATGTACAGTGTGAGAACA
                      ____________________________________________________________
consensus GGTAATCTACGACCATTGATGGCTAATATTCCAGCATCATCTATGTACAGTGTGAGAACA
 
. : . : . : . : . : . :
rJMSF022F08+ GGACCTAATAGAAGCAGGGCAGTGAGCGTTTCTGATTCACCACACGCAACAAGCAGTAAT
rJMSF027N19+ GGACCTAATAGAAGCAGGGCAGTGAGCGTTTCTGATTCACCACACGCAACAAGCAGTAAT
                      ____________________________________________________________
consensus GGACCTAATAGAAGCAGGGCAGTGAGCGTTTCTGATTCACCACACGCAACAAGCAGTAAT
 
. : . : . : . : . : . :
rJMSF022F08+ GCTAGTTCCGAAGTCAGCGTTAATAACAATGC
rJMSF027N19+ GCTAGTTCCGAAGTCAGCGTTAATAACAATGCCCTTTGCACCGATGGAAATGAAGTTGAT
                      ____________________________________________________________
consensus GCTAGTTCCGAAGTCAGCGTTAATAACAATGCCCTTTGCACCGATGGAAATGAAGTTGAT
 
. : . : . : . : . : . :
rJMSF027N19+ GATGATATTTGCAGCTATAGAATTGCTCACTCCCCTGCCACGATGCGTGGTAGGTGATGC
                      ____________________________________________________________
consensus GATGATATTTGCAGCTATAGAATTGCTCACTCCCCTGCCACGATGCGTGGTAGGTGATGC
 
. : . : . : . : . : . :
rJMSF027N19+ TCGGCTTGTCTTGTTGAAACAGTCGAGCGTTCAAGCATCCTTGTCTCCACGAGAACCGAG
                      ____________________________________________________________
consensus TCGGCTTGTCTTGTTGAAACAGTCGAGCGTTCAAGCATCCTTGTCTCCACGAGAACCGAG
 
. : . : . : . : . : . :
rJMSF027N19+ TATGGATATGGGTATGGCTATGTAAAGGTGCATGCATTGGTTAGATGTTGTAATTGGAAG
                      ____________________________________________________________
consensus TATGGATATGGGTATGGCTATGTAAAGGTGCATGCATTGGTTAGATGTTGTAATTGGAAG
 
. : . : . : . : . : . :
rJMSF027N19+ GTCTTGTATTATTAGAAATCCCAGTTATGGTGAAACCATTGCCCTCTTGTTCATGACAAA
                      ____________________________________________________________
consensus GTCTTGTATTATTAGAAATCCCAGTTATGGTGAAACCATTGCCCTCTTGTTCATGACAAA
 
. : . : . : . : . : . :
rJMSF027N19+ AGATTATATGTTGAACTAGCCTCTGGTTTCACTTGGAGAACATGTGAGATTGCTGCCTGC
                      ____________________________________________________________
consensus AGATTATATGTTGAACTAGCCTCTGGTTTCACTTGGAGAACATGTGAGATTGCTGCCTGC