Contig 004280:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027E24Sequence528000783 (4)ref|XP_009802815.1|1e-58PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]174004280 (3)
JMSF027P06Sequence659000783 (4)ref|XP_009802815.1|8e-92PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]176004280 (3)
JMSF043C01Sequence396000783 (4)ref|XP_009802815.1|7e-28PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]349004280 (3)

Alignment

This contig is upended


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rJMSF043C01+                   CCCCCGGGGNCCCCCCCCNGGNTTTTTTTTTTNGNAANNAANNGGGGGNAA
                      ____________________________________________________________
consensus                      CCCCCGGGGNCCCCCCCCNGGNTTTTTTTTTTNGNAANNAANNGGGGGNAA
 
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rJMSF043C01+          AANTTNAAAANGGGNAAAAAANNNNCCCCCNNNNAANNCCCNGGNTTTNNNCCCNTGGGG
                      ____________________________________________________________
consensus             AANTTNAAAANGGGNAAAAAANNNNCCCCCNNNNAANNCCCNGGNTTTNNNCCCNTGGGG
 
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rJMSF043C01+          GGNCCCNNNGNAAAAAAAAAANNTTTTTTTTTTAAAAAAAAAAANCCCCNAANTTTTNTT
                      ____________________________________________________________
consensus             GGNCCCNNNGNAAAAAAAAAANNTTTTTTTTTTAAAAAAAAAAANCCCCNAANTTTTNTT
 
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rJMSF027P06+                GGGGGGGGGGGGGGGGGGTGCTAGTGACGCCGGCATAGTAGTACTGCTTTTTTG
rJMSF043C01+          TTTTGGGGGGGGGGGGGGGGGGGGTGCTAGTGACGCCGGCATAGTAGTACTGCTTTTTTG
rJMSF027E24+                GGGGGGGGGGGGGGGGGGTGCTAGTGACGCCGGCATAGTAGTACTGCTTTTTTG
                      ____________________________________________________________
consensus             TTTTGGGGGGGGGGGGGGGGGGGGTGCTAGTGACGCCGGCATAGTAGTACTGCTTTTTTG
 
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rJMSF027P06+          TAATACTATGTTGCCACCACTGTC-AAAACAGTTTATGTTTTCAGTTGGGTTTTTTTT  
rJMSF043C01+          TAATACTATGTTGCCACCACTGTC-AAAACAGTTTATGTTTTCAGTTGGGTT-TTTTTTG
rJMSF027E24+          TAATACTATGTNGCCACCACTGTCAAAAACAGTTTATGTTTTCAGTTGGGTTNTTTTTTG
                      ____________________________________________________________
consensus             TAATACTATGTTGCCACCACTGTC-AAAACAGTTTATGTTTTCAGTTGGGTTTTTTTTTG
 
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rJMSF043C01+          TGACGGTTATTGTATTTTCCTTTTATATAAAATATAAATATAAATGTAGATAT       
rJMSF027E24+          TGACGGTTANTGTATTTTCCTTTTATATAAAATATAAATATAAATGNAGATATGAGTTGT
                      ____________________________________________________________
consensus             TGACGGTTATTGTATTTTCCTTTTATATAAAATATAAATATAAATGTAGATATGAGTTGT