Contig 004270:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025C06Sequence657010257 (5)gb|KDO66921.1|8e-50hypothetical protein CISIN_1g010845mg [Citrus sinensis]669004270 (3)ref|XP_010032983.1|9e-36PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochond
JMSF041A14Sequence534010257 (5)gb|KDO66921.1|4e-60hypothetical protein CISIN_1g010845mg [Citrus sinensis]634004270 (3)gb|EYU36039.1|3e-48hypothetical protein MIMGU_mgv1a004976mg [Erythranthe guttata]
JMSF043G16Sequence792010257 (5)ref|XP_009783220.1|7e-110PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochond739004270 (3)emb|CDP09204.1|1e-79unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF043G16+ TTGTGGAATCTCTGG
                      ____________________________________________________________
consensus TTGTGGAATCTCTGG
 
. : . : . : . : . : . :
rJMSF043G16+ ATATTCCAAATCTCATGGAAGGATTGGAGTTGATGAATGGCTACGTGTCCCTAGCGTGCA
                      ____________________________________________________________
consensus ATATTCCAAATCTCATGGAAGGATTGGAGTTGATGAATGGCTACGTGTCCCTAGCGTGCA
 
. : . : . : . : . : . :
rJMSF043G16+ GGATGTATTTGCAATCGGGGACTGTTGTGGCTTCCTCGAAAGTACAGGCAAGCCCGTACT
                      ____________________________________________________________
consensus GGATGTATTTGCAATCGGGGACTGTTGTGGCTTCCTCGAAAGTACAGGCAAGCCCGTACT
 
. : . : . : . : . : . :
rJMSF043G16+ TCCAGCCTTGGCTCAGGTTGCAGAACGTCAAGGAAAGTATCTGGCAACGCTAGTGAACCA
rJMSF025C06+ AGTGAACCA
                      ____________________________________________________________
consensus TCCAGCCTTGGCTCAGGTTGCAGAACGTCAAGGAAAGTATCTGGCAACGCTAGTGAACCA
 
. : . : . : . : . : . :
rJMSF043G16+ AATTGGCAAAGCTGGCGGGGGGAAAGCAAATGCTGCCAAGGATTTGGACCTCGGGGATCA
rJMSF041A14+ AAGCNGGCGGGGGGGAAGCAAATGCTGCCAAGGATTTGGACCTCGGGGATCA
rJMSF025C06+ AATTGGCAAAGCTGGCGGGGGGAAAGCAAANGCTGCCAAGGATTTGGACCTCGGGGATCA
                      ____________________________________________________________
consensus AATTGGCAAAGCTGGCGGGGGGAAAGCAAATGCTGCCAAGGATTTGGACCTCGGGGATCA
 
. : . : . : . : . : . :
rJMSF043G16+ ATTCGTTTATAGGCATTTGGGCAGCATGGCAACCATAGGCCGGTATAAGGCGCTTGTTGA
rJMSF041A14+ ATTCGTTTATAGGCATTTGGGCAGCATGGCAACCATAGGCCGGTATAAGGCGCTTGTTGA
rJMSF025C06+ ATTCGTTTATAGGCATTTGGGCAGCATGGCAACCATAGGCCGGTATAAGGTGCTNGTTGA
                      ____________________________________________________________
consensus ATTCGTTTATAGGCATTTGGGCAGCATGGCAACCATAGGCCGGTATAAGGCGCTTGTTGA
 
. : . : . : . : . : . :
rJMSF043G16+ CCTTAGGCAGAGCAAGGAGGCGAAAGGCGTATCGATGGCAGGATTCACAAGCTGGTTTAT
rJMSF041A14+ CCTTAGGCAGAGCAAGGAGGCGAAAGGCGTATCGATGGCAGGATTCACAAGCTGGTTTAT
rJMSF025C06+ CCTTAGGCAGAGCAAGGAGGCGAAAGGCGTATCGATGGCAGGATTCACAAGCTGTTTTAT
                      ____________________________________________________________
consensus CCTTAGGCAGAGCAAGGAGGCGAAAGGCGTATCGATGGCAGGATTCACAAGCTGGTTTAT
 
. : . : . : . : . : . :
rJMSF043G16+ TTGGCGCTCGGCTTACCTGACTCGTGTGGTCAGCTGGAGAAACAGATTCTACGTCGCTAT
rJMSF041A14+ TTGGCGCTCGGCTTACCTGACTCGTGTGGTCAGCTGGAGAAACAGATTCTACGTCGCTAT
rJMSF025C06+ TTGGCGCTCGGCTTACCTGACTCGTGTGGTCAGCTGGAGAAACAGATTCTACGTCGCTAT
                      ____________________________________________________________
consensus TTGGCGCTCGGCTTACCTGACTCGTGTGGTCAGCTGGAGAAACAGATTCTACGTCGCTAT
 
. : . : . : . : . : . :
rJMSF043G16+ CAACTGGTTGACGACTTTGGTGTTTGGTCGTGATATCAGTCGGATATAAGAAACGAACGA
rJMSF041A14+ CAACTGGTTGACGACTTTGGTGTTTGGTCGTGATATCAGTCGGATATAAGAAACGAACGA
rJMSF025C06+ CAACTGGTTGACGACTTTGGTGNTTGGTCGTGATATCAGTCGGATATAAGAAACGAACGA
                      ____________________________________________________________
consensus CAACTGGTTGACGACTTTGGTGTTTGGTCGTGATATCAGTCGGATATAAGAAACGAACGA
 
. : . : . : . : . : . :
rJMSF043G16+ CCAAAAGGCGCCCTCGGTTCATGCCTCCAGAAACGCACCGCGATTTGCTGCTGCTCGAGC
rJMSF041A14+ CCAAAAGGCGCCCTCGGTTCATGCCTGCAGAAACGCACCGCGATTTGCTGCTGCTCGAGC
rJMSF025C06+ CCAAAAGGCGCCCTCGGTTCATGCCTGCAGAAACGCACCGCGATTTGCTGCTGCTCGAGC
                      ____________________________________________________________
consensus CCAAAAGGCGCCCTCGGTTCATGCCTGCAGAAACGCACCGCGATTTGCTGCTGCTCGAGC
 
. : . : . : . : . : . :
rJMSF043G16+ TCAGTTCTGGTAAAATCCTTCTTCTTGTTGCAGGAAATCTTTTTACAAGTTCATGTTTTC
rJMSF041A14+ TCAGTTCTGGTAAAATCCTTCTTCTTGTTGCAGGAAATCTTTTTACAAGTTCATGTTTTC
rJMSF025C06+ TCAGTTCTGGTAAAATCCTTCTTCTTGTTGCAGGAAATCTTTTTACAAGTTCATGTTTTC
                      ____________________________________________________________
consensus TCAGTTCTGGTAAAATCCTTCTTCTTGTTGCAGGAAATCTTTTTACAAGTTCATGTTTTC
 
. : . : . : . : . : . :
rJMSF043G16+ CTCCATCCTCTTCATCATCACACCGTTGCAATGAATCATTACTGCAGATGAAAAGAATAA
rJMSF041A14+ CTCCATCCTCTTCATCATCACACCGTTGCAATGAATCATTACTGCAGATGAAAAGAATAA
rJMSF025C06+ CTCCATCCTCTTCATCATCACACCGTTGCAATGAATCATTACTGCAGATGAAAAGAATAA
                      ____________________________________________________________
consensus CTCCATCCTCTTCATCATCACACCGTTGCAATGAATCATTACTGCAGATGAAAAGAATAA
 
. : . : . : . : . : . :
rJMSF043G16+ CTTCTTGCAATTCAGAGTTCTTTGTTTCTTACTTTTCTTGCCTTCTTTTTCATCTGTAAA
rJMSF041A14+ CTTCTTGCAATTCAGAGTTCTTTGTTTCTTACTTTTCTTGCCTTCTTTTTCATCTGTAAA
rJMSF025C06+ CTTCTTGCAATTCAGAGTTCTTTGTTTCTTACTTTTCTTGCCTTCTTTTTCATCTGTAAA
                      ____________________________________________________________
consensus CTTCTTGCAATTCAGAGTTCTTTGTTTCTTACTTTTCTTGCCTTCTTTTTCATCTGTAAA
 
. : . : . : . : . : . :
rJMSF043G16+ TCTT
rJMSF041A14+ TCTTTGCCAAACAGAATTATTTTACTTGTATAATTTGTGTTGATCCTGCATCCCCCCTCC
rJMSF025C06+ TCTTNGCCAAACAGAATTATTTTACTNGTATAATTTGTGTTGATCCTGCATCCCCCCTCC
                      ____________________________________________________________
consensus TCTTTGCCAAACAGAATTATTTTACTTGTATAATTTGTGTTGATCCTGCATCCCCCCTCC
 
. : . : . : . : . : . :
rJMSF041A14+ CCTCTTTTTTACTTGGAAGTGGATAGATTTCCTTATTAACTT
rJMSF025C06+ CCTCTTTTTTACTTGGAAGTGGATAGATTTCCTTATTAACTTTCTTAGTTAGAATCAATA
                      ____________________________________________________________
consensus CCTCTTTTTTACTTGGAAGTGGATAGATTTCCTTATTAACTTTCTTAGTTAGAATCAATA